SPsimPerGene: A function that generates the simulated data for a single...

In CenterForStatistics-UGent/SPsimSeq: Semi-parametric simulation tool for bulk and single-cell RNA sequencing data

A function that generates the simulated data for a single gene

Description

A function that generates the simulated data for a single gene

Usage

SPsimPerGene(
  cumDens,
  exprmt.design,
  sel.genes.ii,
  log.CPM.transform,
  prior.count,
  LL,
  copSam,
  model.zero.prob,
  fracZero.logit.list,
  const.mult
)

Arguments

cumDens	cumulative density
exprmt.design	the experiment design
sel.genes.ii	selected gene
log.CPM.transform	a boolean, is log-CPM transform required?
prior.count	the prior count
LL	the library sizes
copSam	the generated copula
model.zero.prob	a boolean, should the zeroes be modelled separately
fracZero.logit.list	The zero model
const.mult	a large constant for the CPM transform, normally 1e6

Value

Simulated cpm values

CenterForStatistics-UGent/SPsimSeq documentation built on Nov. 21, 2024, 6:30 a.m.