estIndepModel: Estimate the independence model belonging to one view

In CenterForStatistics-UGent/compIntegrate: Compositional omics model based visual integration

Estimate the independence model belonging to one view

Description

Estimate the independence model belonging to one view

Usage

estIndepModel(
  data,
  distribution,
  compositional,
  maxIt,
  tol,
  link,
  invLink,
  meanVarFit,
  newtonRaphson,
  dispFreq,
  ...
)

Arguments

data	a list of data matrices with the same number of samples n in the rows. Also phyloseq objects are acceptable
distribution	a character string describing which distributional assumption should be used.
compositional	A logical indicating if the dataset should be treated as compositional
maxIt	an integer, the maximum number of iterations
tol	A small scalar, the convergence tolerance
link, invLink	link and inverse link function
meanVarFit	mean variance model
newtonRaphson	a boolean, should newton-raphson be used
dispFreq	An integer, frequency of dispersion estimation
...	passed on to the estOff() function

Value

A list with elements

rowOff	The row offsets
colOff	The column offsets
converged	A logical flag, indicating whether the fit converged
iter	An integer, the number of iterations

CenterForStatistics-UGent/compIntegrate documentation built on Aug. 4, 2023, 1:08 p.m.