estIndepModel: Estimate the independence model belonging to one view

View source: R/estIndepModel.R

estIndepModelR Documentation

Estimate the independence model belonging to one view

Description

Estimate the independence model belonging to one view

Usage

estIndepModel(
  data,
  distribution,
  compositional,
  maxIt,
  tol,
  link,
  invLink,
  meanVarFit,
  newtonRaphson,
  dispFreq,
  ...
)

Arguments

data

a list of data matrices with the same number of samples n in the rows. Also phyloseq objects are acceptable

distribution

a character string describing which distributional assumption should be used.

compositional

A logical indicating if the dataset should be treated as compositional

maxIt

an integer, the maximum number of iterations

tol

A small scalar, the convergence tolerance

link, invLink

link and inverse link function

meanVarFit

mean variance model

newtonRaphson

a boolean, should newton-raphson be used

dispFreq

An integer, frequency of dispersion estimation

...

passed on to the estOff() function

Value

A list with elements

rowOff

The row offsets

colOff

The column offsets

converged

A logical flag, indicating whether the fit converged

iter

An integer, the number of iterations


CenterForStatistics-UGent/compIntegrate documentation built on Aug. 4, 2023, 1:08 p.m.