estOff: Estimate the row/column parameters of the independence model

View source: R/estOff.R

estOffR Documentation

Estimate the row/column parameters of the independence model

Description

Estimate the row/column parameters of the independence model

Usage

estOff(
  data,
  distribution,
  rowOff,
  colOff,
  meanVarTrend,
  col,
  newtonRaphson,
  libSizes,
  ...
)

Arguments

data

a list of data matrices with the same number of samples n in the rows. Also phyloseq objects are acceptable

distribution

a character string describing which distributional assumption should be used.

rowOff, colOff

current row and column offset estimates

meanVarTrend

The estimated mean-variance trend

col

A logical, should column offsets be estimated

newtonRaphson

A boolean, should Newton-Raphson be used to solve the estimating equations

libSizes

The library sizes, used to evaluate the mean-variance trend

...

passed onto nleqslv

Value

The estimated marginal parameters


CenterForStatistics-UGent/compIntegrate documentation built on Aug. 4, 2023, 1:08 p.m.