extractData: Helper function to extract data matrix from phyloseq,...

In CenterForStatistics-UGent/compIntegrate: Compositional omics model based visual integration

Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows

Description

Helper function to extract data matrix from phyloseq, expressionset objects etc. Also filers out all zero rows

Usage

extractData(data, logTransformGaussian = TRUE)

Arguments

data	The list of data objects, either matrix, phyloseq or ExpressionSet objects
logTransformGaussian	A boolean, should array data be logtransformed

Value

the raw data matrices, samples in the rows

Examples

data(Zhang)
matrixList = extractData(list("microbiome" = zhangMicrobio,
"metabolome" = zhangMetabo))

CenterForStatistics-UGent/compIntegrate documentation built on Aug. 4, 2023, 1:08 p.m.