fetch_tpm: Fetch the robust TPM values.
In CharlesJB/metageneInputs: Create input files for metagene article
Description
Usage
Arguments
Value
Description
This function will first fetch the TPM values that overlap the regions
of interest from the robust TSS dataset (FantomTSS.hg19). When there is more
than one TSS for a genomic region, the mean value will be used. Only the
regions that overlaps at least one robust TSS will be returned.
Usage
1
fetch_tpm(region, cell_line)
Arguments
region
A GRanges object corresponding to the regions of
interest.
cell_line
The cell line to extract the robust TSS TPM values.
Value
A GRanges corresponding to the subset of the region
that overlaps at least on robust TSS with the mean robust TSS values
for each range.
CharlesJB/metageneInputs documentation built on May 6, 2019, 9:58 a.m.
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Description Usage Arguments Value
Description
This function will first fetch the TPM values that overlap the regions of interest from the robust TSS dataset (FantomTSS.hg19). When there is more than one TSS for a genomic region, the mean value will be used. Only the regions that overlaps at least one robust TSS will be returned.
Usage
1 | fetch_tpm(region, cell_line)
|
Arguments
region |
A |
cell_line |
The cell line to extract the robust TSS TPM values. |
Value
A GRanges corresponding to the subset of the region
that overlaps at least on robust TSS with the mean robust TSS values
for each range.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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