get_robust_enhancer_regions: Extract the enhancers regions
In CharlesJB/metageneInputs: Create input files for metagene article
Description
Usage
Arguments
Details
Value
Description
This uses the enhancers from the FantomEnhancers.hg19 package. The
TPM values are calculated using the FantomTSS.hg19 package by
calculating the mean expression of the TSS in each region.
Usage
1
get_robust_enhancer_regions(cell_line, keep_y = TRUE)
Arguments
cell_line
The cell line to extract
keep_y
Keep chrY. TRUE or FALSE. Default: TRUE.
Details
Finally, only the "robust" enhancers are returned, which means that only the
regions that overlaps at least one TSS from FantomTSS.hg19.
Value
A GRanges corresponding to the enhancers
CharlesJB/metageneInputs documentation built on May 6, 2019, 9:58 a.m.
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Description Usage Arguments Details Value
Description
This uses the enhancers from the FantomEnhancers.hg19 package. The
TPM values are calculated using the FantomTSS.hg19 package by
calculating the mean expression of the TSS in each region.
Usage
1 | get_robust_enhancer_regions(cell_line, keep_y = TRUE)
|
Arguments
cell_line |
The cell line to extract |
keep_y |
Keep chrY. |
Details
Finally, only the "robust" enhancers are returned, which means that only the
regions that overlaps at least one TSS from FantomTSS.hg19.
Value
A GRanges corresponding to the enhancers
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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