Description Usage Arguments Details Value
This uses the enhanceeers from the FantomEnhancers.hg19
package. The
TPM values are calculated using the FantomTSS.hg19
package by
calculating the mean expression of the TSS in each region.
1 | get_robust_promoter_regions(cell_line, keep_y = TRUE)
|
cell_line |
The cell line to extract |
keep_y |
Keep chrY. |
Finally, only the "robust" enhancers are returned, which means that only the
regions that overlaps at least one TSS from FantomTSS.hg19
.
A GRanges
corresponding to the enhancers
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