Man pages for ChemoSens/PTRMSR
Analysis of PTRMS data
| anovaTable | Run a batch of ANOVAs and store the results in a table. |
| detectCycle | detectCycle |
| detectStartsInFile | Detects several starts in one file |
| diagnosis | diagnosis Return whether a list of files (in a specific... |
| normalizeByEval | normalizeByEval Divides each evaluation by the sum of its... |
| peakDiagnosis | peakDiagnosis Returns potential problematic peaks: when one... |
| pickingPeaks | pickingPeaks |
| plot_fullspectra | This function allows to draw spectra according to a group and... |
| plot.hm | plot_lcmsHeatmap |
| plot.ibm | plot.ibm |
| plot.ibt | plot.ibt |
| ptrHeatmap | ptrHeatmap |
| ptrIntensityByMass | ptrIntensityByMass |
| ptrIntensityByTime | ptrIntensityByTime |
| ptrRead | Read .h5 file from PTR and return a list containing useful... |
| ptrReadListIBM | ptrReadListIBM This function aims to read a list of files of... |
| ptrReadListIBT | This function aims to read a list of files of PTR type and to... |
| ptrv | example of dataset stemming from ptrViewer |
| ptrvComparableData | ptrvComparableData |
| ptrvCreateMetaFile | ptrvCreateMetaFile |
| ptrvDetectStart | ptrvDetectStart |
| ptrvIntensity | ptrvIntensity |
| ptrvIntensityByTime | ptrvIntensityByTime |
| ptrvList | example of output of ptrvReadList |
| ptrvListAnova | ptrvListAnova returns the two way mixed ANOVA product*subject... |
| ptrvListComparableData | ptrvListComparableData |
| ptrvListCVA | ptrvListCVA |
| ptrvListHeatmap | ptrvListHeatmap returns heatmap with rows as individuals and... |
| ptrvListIntensity | ptrvListIntensity |
| ptrvListIntensityByTime | ptrvListIntensityByTime A function automating all... |
| ptrvListPCA | Runs PCA on a data frame stemming from ptrvReadList() |
| ptrvListSignificantSNRIons | ptrvListSignificantSNRIons |
| ptrvQCAverages | ptrvQCAverages |
| ptrvQCGetDfs | ptrvQCGetDfs |
| ptrvQCKruskal | ptrvQCKruskal |
| ptrvQCPlotSummary | ptrvQCPlotSummary |
| ptrvQCStats | ptrvQCStats |
| ptrvReport | Returns a report for a given dataset |
| ptrvSameTimePoints | ptrvSameTimePoints returns a dataframe with the same... |
| ptrvSignificantSNRIons | ptrvSignificantSNRIons |
| sameTimePoints | sameTimePoints sameTimePoints |
| smoothRes | smoothRes Returns a list of all graph smoothed |
| widedf | dataset in the wide format |
