ptrvListAnova: ptrvListAnova returns the two way mixed ANOVA product*subject...

In ChemoSens/PTRMSR: Analysis of PTRMS data

ptrvListAnova returns the two way mixed ANOVA product*subject (with random subject effect) for each ion

Description

ptrvListAnova returns the two way mixed ANOVA product*subject (with random subject effect) for each ion

Usage

ptrvListAnova(
  df,
  ionToRemove = NULL,
  log = FALSE,
  normalizeByEval = FALSE,
  model = "intensity~product+(1|subject)+(1|product:subject)",
  alpha = 0.05,
  columns = c("G_Mean", "F_Product", "P_Product", "F_Product_Significance", "SE_Product",
    "R2", "P_ShapiroWilks", "P_Levene_Product", "Mean_Product", "Group_Product",
    "P_Subject")
)

Arguments

df	data frame with "ion","intensity","product","subject" columns,
ionToRemove	vector of ion to remove from the analysis
log	if TRUE the data is logged
normalizeByEval	if TRUE, each evaluation (row) of the matrix is divided by the sum of all the variables for this evaluation (row sum)
model	"intensity~product+(1|subject)+(1|product:subject)" or other model containing these factors
alpha	limit of significance
columns	choose between c("G_Mean","F_Product","P_Product","F_Product_Significance","SE_Product","R2","P_ShapiroWilks","P_Levene_Product","Mean_Product","Group_Product","P_Subject") )

ChemoSens/PTRMSR documentation built on June 15, 2025, 10:40 a.m.