throat.otu.tab: OTU count table from 16S sequencing of the throat microbiome...
In ChongWu-Biostat/MiSPU: Microbiome Based Sum of Powered Score (MiSPU) Tests
Description
Usage
Format
Details
Source
Examples
Description
It is part of a microbiome data set for studying the effect of
smoking on the upper respiratory tract microbiome. The original data
set contains samples from both throat and nose microbiomes, and
from both body sides. This data set comes from the throat microbiome
of left body side. It contains 60 subjects consisting of 32 nonsmokers
and 28 smokers.
Usage
1
Format
The format is:
chr "throat.otu.tab"
Details
The OTU table is produced by the QIIME software. Singleton OTUs have
been discarded.
Source
Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, et al. (2010)
Disordered Microbial Communities in the Upper Respiratory Tract of
Cigarette Smokers. PLoS ONE 5(12): e15216.
Examples
1
2
data(throat.otu.tab)
## maybe str(throat.otu.tab) ; plot(throat.otu.tab) ...
ChongWu-Biostat/MiSPU documentation built on May 6, 2019, 11:18 a.m.
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Description Usage Format Details Source Examples
Description
It is part of a microbiome data set for studying the effect of smoking on the upper respiratory tract microbiome. The original data set contains samples from both throat and nose microbiomes, and from both body sides. This data set comes from the throat microbiome of left body side. It contains 60 subjects consisting of 32 nonsmokers and 28 smokers.
Usage
1 |
Format
The format is: chr "throat.otu.tab"
Details
The OTU table is produced by the QIIME software. Singleton OTUs have been discarded.
Source
Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, et al. (2010) Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers. PLoS ONE 5(12): e15216.
Examples
1 2 | data(throat.otu.tab)
## maybe str(throat.otu.tab) ; plot(throat.otu.tab) ...
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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