throat.tree: UPGMA tree of the OTUs from 16S sequencing of the throat...
In ChongWu-Biostat/MiSPU: Microbiome Based Sum of Powered Score (MiSPU) Tests
Description
Usage
Format
Details
Source
Examples
Description
The OTU tree is constructed using UPGMA on the K80 distance matrice of
the OTUs. It is a rooted tree of class "phylo".
Usage
1
Format
The format is:
chr "throat.tree"
Details
The OTUs are produced by the QIIME software. Singleton OTUs have
been discarded.
Source
Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, et al. (2010)
Disordered Microbial Communities in the Upper Respiratory Tract of
Cigarette Smokers. PLoS ONE 5(12): e15216.
Examples
1
2
data(throat.tree)
## maybe str(throat.tree) ; plot(throat.tree) ...
ChongWu-Biostat/MiSPU documentation built on May 6, 2019, 11:18 a.m.
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Description Usage Format Details Source Examples
Description
The OTU tree is constructed using UPGMA on the K80 distance matrice of the OTUs. It is a rooted tree of class "phylo".
Usage
1 |
Format
The format is: chr "throat.tree"
Details
The OTUs are produced by the QIIME software. Singleton OTUs have been discarded.
Source
Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, et al. (2010) Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers. PLoS ONE 5(12): e15216.
Examples
1 2 | data(throat.tree)
## maybe str(throat.tree) ; plot(throat.tree) ...
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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