API for ChristophH/sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
| Global functions | |
|---|---|
| combine_counts | Source code |
| combine_means | Source code |
| compare_expression | Man page Source code |
| compare_expression_full | Source code |
| correct | Man page Source code |
| correct_counts | Man page Source code |
| deviance_residual | Source code |
| diff_mean_test | Man page Source code |
| diff_mean_test_conserved | Man page Source code |
| distribution_shift | Source code |
| fit_glmGamPoi | Source code |
| fit_glmGamPoi_offset | Source code |
| fit_nb | Source code |
| fit_nb_fast | Source code |
| fit_nb_offset | Source code |
| fit_nb_theta_given | Source code |
| fit_overdisp_mle | Source code |
| fit_poisson | Source code |
| fit_qpoisson | Source code |
| generate | Man page Source code |
| get_model_par_mat | Source code |
| get_model_pars | Source code |
| get_model_pars_nonreg | Source code |
| get_model_var | Man page Source code |
| get_nb_fit | Source code |
| get_nz_median2 | Man page Source code |
| get_residual_var | Man page Source code |
| get_residuals | Man page Source code |
| grouped_mean_diff_per_row | Source code |
| is_outlier | Man page Source code |
| make.sparse | Man page Source code |
| make_cell_attr | Source code |
| mean_boot | Source code |
| mean_boot_grouped | Source code |
| model_comparison_lrt | Source code |
| model_comparison_lrt_free | Source code |
| model_comparison_lrt_free1 | Source code |
| model_comparison_lrt_free2 | Source code |
| model_comparison_lrt_free3 | Source code |
| model_comparison_ttest | Source code |
| np_de_test | Source code |
| pbmc | Man page |
| pearson_residual | Source code |
| pearson_residual2 | Source code |
| plot_model | Man page Source code |
| plot_model_pars | Man page Source code |
| qpois_reg | Source code |
| reg_model_pars | Source code |
| reg_pars | Source code |
| reverse_regression | Source code |
| robust_scale | Man page Source code |
| robust_scale_binned | Man page Source code |
| row_gmean | Man page Source code |
| row_gmean_dgcmatrix | Source code |
| row_gmean_grouped_dgcmatrix | Source code |
| row_mean_dgcmatrix | Source code |
| row_mean_grouped_dgcmatrix | Source code |
| row_nonzero_count_dgcmatrix | Source code |
| row_nonzero_count_grouped_dgcmatrix | Source code |
| row_var | Man page Source code |
| row_var_dgcmatrix | Source code |
| smooth_via_pca | Man page Source code |
| sq_deviance_residual | Source code |
| umify | Man page Source code |
| umify_data | Man page |
| vst | Man page Source code |
