Files in ChristophH/sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/RcppExports.R
R/data.R
R/denoise.R
R/differential_expression.R
R/fit.R
R/generate.R
R/plotting.R
R/umify.R
R/utils.R
R/vst.R
README.md
cran-comments.md
data/pbmc.rda
data/umify_data.rda
inst/CITATION
man/compare_expression.Rd
man/correct.Rd
man/correct_counts.Rd
man/diff_mean_test.Rd
man/diff_mean_test_conserved.Rd
man/generate.Rd
man/get_model_var.Rd
man/get_nz_median2.Rd
man/get_residual_var.Rd
man/get_residuals.Rd
man/is_outlier.Rd
man/make.sparse.Rd
man/pbmc.Rd
man/plot_model.Rd
man/plot_model_pars.Rd
man/robust_scale.Rd
man/robust_scale_binned.Rd
man/row_gmean.Rd
man/row_var.Rd
man/smooth_via_pca.Rd
man/umify.Rd
man/umify_data.Rd
man/vst.Rd
revdep/.gitignore
revdep/README.md
revdep/cran.md
revdep/email.yml
revdep/failures.md
revdep/problems.md
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/utils.cpp
supplement/batch_correction.Rmd
supplement/correcting.Rmd
supplement/differential_expression.Rmd
supplement/method_comparison.Rmd
supplement/np_diff_mean_test.Rmd
supplement/render_all.R
supplement/seurat.Rmd
supplement/smartseq2.Rmd
supplement/theta_regularization.Rmd
supplement/umify_apply.Rmd
supplement/umify_learn.Rmd
supplement/variance_stabilizing_transformation.Rmd
tests/testthat.R
tests/testthat/test_denoising.R
tests/testthat/test_differential_expression.R
tests/testthat/test_generate.R
tests/testthat/test_utils.R
tests/testthat/test_vst.R
