Man pages for ChristopherBarrington/domainClassifyR
Classification of Hi-C interaction domains
| add.domain.features | Add information to the domain contacts entry |
| check_order_2D_intervals | Check that the 2D intervals have interval1 is upstream of... |
| classify_domains.bak | Determine the group(s) to which a domain belongs |
| classify_domains.double | Determine the group(s) to which a domain belongs |
| count.contacts | Counts the number of extracted fend pairs |
| get_contacts | Create a list of information for a set of intervals |
| get.domain.position.classifications | Get the values for sectors of each domain |
| get.fend.samples | Sample fragment ends randomly to get a null distribution |
| get.high.score.fends | Subset high-scoring fend pairs from all observed contacts |
| get_min_fend_pair_domains | Select domains with a minimum number of contacts |
| get_Q_values | Correct for multiple testing in a data.frame |
| get_Z_statistics | Calculates Z statistics and p-values |
| load_domains | Load information on domain intervals |
| merge_domains | Combine a list of domain contacts entries |
