get_Z_statistics: Calculates Z statistics and p-values
In ChristopherBarrington/domainClassifyR: Classification of Hi-C interaction domains
Description
Usage
Arguments
Details
Value
View source: R/get_Z_statistics.R
Description
Calculates the probability that a domain sector contains more high-score fend pairs than expected by chance. Uses the
observed data and theoretical fend pairs as expected proportions.
Usage
1
get_Z_statistics(contacts)
Arguments
contacts
List of domain entries
Details
Converts the Z-statistic to a p-value of enrichment using pnorm(-Z). For comparison, a p-value is
calculated using pnorm(OBS, mean=MEAN, sd=SDEV, lower.tail=FALSE). No correction for multiple testing is made.
Value
The contacts list, with additional information. Contains 'P', derived from the Z-statistic and 'p' derived from the observed high-score count.
ChristopherBarrington/domainClassifyR documentation built on May 3, 2019, 5:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value
View source: R/get_Z_statistics.R
Description
Calculates the probability that a domain sector contains more high-score fend pairs than expected by chance. Uses the observed data and theoretical fend pairs as expected proportions.
Usage
1 | get_Z_statistics(contacts)
|
Arguments
contacts |
List of domain entries |
Details
Converts the Z-statistic to a p-value of enrichment using pnorm(-Z). For comparison, a p-value is calculated using pnorm(OBS, mean=MEAN, sd=SDEV, lower.tail=FALSE). No correction for multiple testing is made.
Value
The contacts list, with additional information. Contains 'P', derived from the Z-statistic and 'p' derived from the observed high-score count.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.