get_Q_values: Correct for multiple testing in a data.frame

In ChristopherBarrington/domainClassifyR: Classification of Hi-C interaction domains

Description

Uses p.adjust to correct for multiple testing on all p-values in the data.frame.

Usage

get_Q_values(contacts, types = c("POTENTIAL", "OBSERVED"), method = "BH")

Arguments

contacts	The list of domains generated from get.contacts()
types	Correct the p-values calculated from which null distribution(s)? 'POTENTIAL' uses all theoretically possible fend pairs or 'OBSERVED' uses the fend pairs that were identified.
method	The correction method to apply, see p.adjust()

Value

The contacts list, with additional information in the Z_STATISTICS.

ChristopherBarrington/domainClassifyR documentation built on May 3, 2019, 5:22 p.m.