merge_domains: Combine a list of domain contacts entries

In ChristopherBarrington/domainClassifyR: Classification of Hi-C interaction domains

Description

Concatenates the fend pairs for ALL and HIGH_SCORE from a list of domains and defines the interval as the region covered by the merged domains

Usage

merge_domains(contacts, intervalID = "merged")

Arguments

contacts	List of domain contacts to be merged
intervalID	Character string that will be used in the DOMAIN entry

Value

A list for a new meta-domain

Examples

contacts <- append(contacts, merge_domains(contacts=contacts[1:3], intervalID='foo+bar+baz'))
print.fixed(plot_domain_contacts(contacts, ncol=3))

ChristopherBarrington/domainClassifyR documentation built on May 3, 2019, 5:22 p.m.