d7: CRISPR data set

In CityUHK-CompBio/HTSanalyzeR2: HTSanalyzeR2: An R package for functional annotation, network analysis and time series analysis of high-throughput data

Description

gRNA sequencing data after transducting the CRISPR system into a human cancer cellline as time goes by. They are further pre-processed by MAGeCK. Details please refer to MAGeCK.

Usage

d7

Format

An object of class data.frame with 8000 rows and 14 columns.

References

Tzelepis K, Koike-Yusa H, De Braekeleer E, et al. A CRISPR Dropout Screen Identifies Genetic Vulnerabilities and Therapeutic Targets in Acute Myeloid Leukemia. Cell Reports. 2016;17(4):1193-1205. doi:10.1016/j.celrep.2016.09.079.

Examples

data(d7)
data(d13)
data(d25)

CityUHK-CompBio/HTSanalyzeR2 documentation built on Dec. 3, 2020, 2:35 a.m.