Files in CityUHK-CompBio/HTSanalyzeR2
Gene set over-representation, enrichment and network analyses for high- throughput data and corresponding time-series data

.Rbuildignore
.gitignore
DESCRIPTION
HTSanalyzeR2.Rproj
NAMESPACE
R/Batch_class.R R/HTSanalyzeR2.R R/HTSanalyzeR4MAGeCK.R R/RcppExports.R R/accessor.R R/class_union.R R/d3plot.R R/data.R R/gscaTS.R R/gsca_analyze.R R/gsca_class.R R/gsca_enrichmap.R R/gsca_load_genesets.R R/gsca_preprocess.R R/gsca_report.R R/gsca_summarize.R R/gsca_view.R R/nwaTS.R R/nwa_analyze.R R/nwa_class.R R/nwa_preprocess.R R/nwa_report.R R/nwa_summarize.R R/nwa_view.R R/stat_test.R
R/sysdata.rda
R/utils.R R/zzz.R README.md
data/Biogrid_HS_Interactome.rda
data/Biogrid_HS_Mat.rda
data/GSE33113_limma.rda
data/d13.rda
data/d25.rda
data/d7.rda
data/d7_gsca.rda
data/d7_nwa.rda
data/gscaTS.rda
data/nwaTS.rda
data/xn.rda
inst/NEWS
inst/htmlwidgets/forceGraph.js
inst/htmlwidgets/forceGraph.yaml
inst/htmlwidgets/forceGraph/common.css
inst/htmlwidgets/forceGraph/common.js
inst/htmlwidgets/forceGraph/jquery.min.js
inst/htmlwidgets/forceGraph/plugins.min.js
inst/htmlwidgets/forceGraph/settings.js
inst/htmlwidgets/forceGraph/sigma.min.js
inst/templates/app.R
inst/templates/settings.html
man/Biogrid_HS_Interactome.Rd man/Biogrid_HS_Mat.Rd man/GOGeneSets.Rd man/GSCA.Rd man/GSCABatch.Rd man/GSE33113_limma.Rd man/HTSanalyzeR2.Rd man/HTSanalyzeR4MAGeCK.Rd man/KeggGeneSets.Rd man/MSigDBGeneSets.Rd man/NWA.Rd man/NWABatch.Rd man/analyze.Rd man/analyzeGscaTS.Rd man/analyzeNwaTS.Rd man/annotationConvertor.Rd man/appendGSTerms.Rd man/appendGSTermsTS.Rd man/cellHTS2OutputStatTests.Rd man/d7.Rd man/d7_gsca.Rd man/d7_nwa.Rd man/duplicateRemover.Rd man/extractSubNet-NWA-method.Rd man/getInteractome.Rd man/getPara.Rd man/getResult.Rd man/getSummary.Rd man/getTopGeneSets.Rd man/gscaTS.Rd man/interactome.Rd man/interactomeNwaTS.Rd man/nwaTS.Rd man/plotGSEA.Rd man/preprocess.Rd man/preprocessGscaTS.Rd man/preprocessNwaTS.Rd man/report.Rd man/reportAll.Rd man/summarize.Rd man/viewEnrichMap-GSCA-method.Rd man/viewGSEA.Rd man/viewSubNet-NWA-method.Rd man/xn.Rd
src/.gitignore
src/RcppExports.cpp
src/calcGScore.cpp
src/symbols.rds
vignettes/HTSanalyzeR2-vignette.Rmd vignettes/HTSanalyzeR2-vignette.pdf
vignettes/bibliography.bib
vignettes/figures/enrichMap1.PNG
vignettes/figures/enrichMap2.PNG
vignettes/figures/network.PNG
CityUHK-CompBio/HTSanalyzeR2 documentation built on Dec. 15, 2017, 6:58 a.m.