apply_correspondence: Apply Peak Correspondence

In Coayala/MetaboTandem: Pipeline for the analysis of LC-MS/MS data

Apply Peak Correspondence

Description

Function to apply peak picking parameters on a data subset

Usage

apply_correspondence(
  data,
  metadata,
  min_frac,
  min_samples,
  bin = 0.25,
  bw = 30,
  group_by
)

Arguments

data	An MSnExp object in centroid mode.
metadata	Sample information data.frame.
min_frac	Minimum fraction of samples within a sample group a peak must be present to be considered a peak group.
min_samples	Minimum number of samples in at least one sample group a peak must be present to be considered a peak group.
bin	Size of the overlapping mz slices
bw	= Bandwidth of the smoothing kernel
group_by	Vector with the same length of the samples with grouping information

Coayala/MetaboTandem documentation built on April 7, 2024, 3:39 a.m.