R/data.R

In CogDisResLab/BioPathNet: BioPathNet: Three Pod Analysis System

#' List of pathways and associated genes in homo sapiens
#'
#' The processed form of the October 2020 Pathway annotation
#' containing every pathway annotated with the associated
#' genes in humans. This uses the Symbol annotation from BaderLab.
#'
#'
#' @format A list
#'
#' @source \url{http://download.baderlab.org/EM_Genesets/October_01_2020/Human/symbol/Human_GO_AllPathways_with_GO_iea_October_01_2020_symbol.gmt}

"hsapiens"

#' List of pathways and associated genes in mus musculus
#'
#' The processed form of the October 2020 Pathway annotation
#' containing every pathway annotated with the associated
#' genes in mice. This uses the Symbol annotation from BaderLab.
#'
#'
#' @format A list
#'
#' @source \url{http://download.baderlab.org/EM_Genesets/October_01_2020/Mouse/symbol/Mouse_GO_AllPathways_with_GO_iea_October_01_2020_symbol.gmt}

"mmusculus"

#' List of pathways and associated genes in rattus norvegicus
#'
#' The processed form of the October 2020 Pathway annotation
#' containing every pathway annotated with the associated
#' genes in rats. This uses the Symbol annotation from BaderLab.
#'
#'
#' @format A list
#'
#' @source \url{http://download.baderlab.org/EM_Genesets/October_01_2020/MRat/symbol/Rat_GO_AllPathways_with_GO_iea_October_01_2020_symbol.gmt}

"rnorvegicus"