Files in CollinErickson/GauPro

Gaussian Process Fitting

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

GauPro.Rproj

NAMESPACE

NEWS.md R/GauPro_Gauss.R R/GauPro_Gauss_LOO.R R/GauPro_S3.R R/GauPro_base.R R/GauPro_selector.R R/Gaussian_deviance.R R/Gaussian_hessian.R R/RcppExports.R R/convert_X_with_formula.R R/convert_X_with_formula_back.R R/corr.R R/find_kernel_cts_dims.R R/find_kernel_factor_dims.R R/find_kernel_factor_dims2.R R/gpkm.R R/grad_share.R R/gradfuncarray.R R/is_formula.R R/kernel_Cubic.R R/kernel_Exponential.R R/kernel_Factor.R R/kernel_Gaussian.R R/kernel_GowerFactor.R R/kernel_LatentFactor.R R/kernel_Matern32.R R/kernel_Matern52.R R/kernel_OrderedFactor.R R/kernel_PowerExp.R R/kernel_RatQuad.R R/kernel_Triangle.R R/kernel_White.R R/kernel_base.R R/kernel_beta.R R/kernel_ignoreinds.R R/kernel_model.R R/kernel_model_LOO.R R/kernel_periodic.R R/kernel_product.R R/kernel_sum.R R/optim_share2.R R/sqrt_matrix.R R/transformations.R R/trend_0.R R/trend_LM.R R/trend_base.R R/trend_constant.R README.Rmd README.md cran-comments.md man/Cubic.Rd man/Exponential.Rd man/FactorKernel.Rd man/GauPro.Rd man/GauPro_Gauss.Rd man/GauPro_Gauss_LOO.Rd man/GauPro_base.Rd man/GauPro_kernel.Rd man/GauPro_kernel_beta.Rd man/GauPro_kernel_model.Rd man/GauPro_kernel_model_LOO.Rd man/GauPro_trend.Rd man/Gaussian.Rd man/Gaussian_devianceC.Rd man/Gaussian_hessianC.Rd man/Gaussian_hessianCC.Rd man/Gaussian_hessianR.Rd man/GowerFactorKernel.Rd man/IgnoreIndsKernel.Rd man/LatentFactorKernel.Rd man/Matern32.Rd man/Matern52.Rd man/OrderedFactorKernel.Rd man/Periodic.Rd man/PowerExp.Rd man/RatQuad.Rd man/Triangle.Rd man/White.Rd man/arma_mult_cube_vec.Rd man/corr_cubic_matrix_symC.Rd man/corr_exponential_matrix_symC.Rd man/corr_gauss_dCdX.Rd man/corr_gauss_matrix.Rd man/corr_gauss_matrixC.Rd man/corr_gauss_matrix_armaC.Rd man/corr_gauss_matrix_symC.Rd man/corr_gauss_matrix_sym_armaC.Rd man/corr_latentfactor_matrix_symC.Rd man/corr_latentfactor_matrixmatrixC.Rd man/corr_matern32_matrix_symC.Rd man/corr_matern52_matrix_symC.Rd man/corr_orderedfactor_matrix_symC.Rd man/corr_orderedfactor_matrixmatrixC.Rd man/gpkm.Rd man/gradfuncarray.Rd man/gradfuncarrayR.Rd man/kernel_cubic_dC.Rd man/kernel_exponential_dC.Rd man/kernel_gauss_dC.Rd man/kernel_latentFactor_dC.Rd man/kernel_matern32_dC.Rd man/kernel_matern52_dC.Rd man/kernel_orderedFactor_dC.Rd man/kernel_product.Rd man/kernel_sum.Rd man/plus-.GauPro_kernel.Rd man/predict.GauPro.Rd man/print.summary.GauPro.Rd man/sqrt_matrix.Rd man/summary.GauPro.Rd man/times-.GauPro_kernel.Rd man/trend_0.Rd man/trend_LM.Rd man/trend_c.Rd

revdep/.gitignore

revdep/email.yml

scratch/BestUnbiasedLinearPredictors.R scratch/BestUnbiasedLinearPredictors.Rmd

scratch/BestUnbiasedLinearPredictors.html

scratch/EGO.R scratch/EI_tdist.R scratch/ExampleForArwed.R scratch/FactorKernelCheckDeriv.R scratch/FactorSpeedTest.R scratch/GauPr_LB.R scratch/GauPro_Gauss_old.R scratch/GauPro_old.R scratch/Javier/GPR.R

scratch/Javier/NMC_fixed.csv

scratch/Javier/NMC_ok.csv

scratch/Makevars_orig

scratch/Makevars_orig.win

scratch/RanApley_se_adjust_test.R scratch/SK_kernel_model.R scratch/SK_kernel_model2.R scratch/ToDo.md scratch/Welch.R scratch/after_success.R

scratch/corr_gauss_matrix_par_test.cpp

scratch/deprecated_kernelmodel_maxEIwithfactorsoriginal.R scratch/fastfit.R

scratch/gradfuncarray.cpp

scratch/kernel_Gaussian.R scratch/kernel_Gaussian_l.R scratch/kernel_Gaussian_logl.R scratch/parametersvsadaptive.Rmd scratch/peak_example.R scratch/predict_speed_test.R scratch/run_time_experiment.R scratch/scratch1.R scratch/scratchOTL.R scratch/scratch_EIcorrected.R scratch/scratch_GauPro_Gauss_LOO.R scratch/scratch_KnowledgeGradient.R scratch/scratch_LOO.R scratch/scratch_RBF.R scratch/scratch_arma_cube_vec_multiply.R scratch/scratch_augmentedEI.R scratch/scratch_chol_backsolve.R scratch/scratch_compare_corr_gauss_matrix.R scratch/scratch_comparer.R scratch/scratch_cts_and_discrete_example.R scratch/scratch_factor_EI.R scratch/scratch_formuladf_attenu.R scratch/scratch_grad_dist.R scratch/scratch_hessian.R scratch/scratch_kernel_Exponential.R scratch/scratch_kernel_FactorKernel.R scratch/scratch_kernel_Gaussian.R scratch/scratch_kernel_Gaussian_beta.R scratch/scratch_kernel_Gaussian_d2C_grad_dist.R scratch/scratch_kernel_Gaussian_l.R scratch/scratch_kernel_Gaussian_logl.R scratch/scratch_kernel_Matern32.R scratch/scratch_kernel_Matern52.R scratch/scratch_kernel_Periodic.R scratch/scratch_kernel_PowerExp.R scratch/scratch_kernel_RatQuad.R scratch/scratch_kernel_Sum.R scratch/scratch_kernel_White.R scratch/scratch_kernel_check_useC.R scratch/scratch_kernel_grad.R scratch/scratch_kernel_model_1D.R scratch/scratch_kernel_model_LOO.R scratch/scratch_kernel_model_LOO2.R scratch/scratch_kernel_model_piston.R scratch/scratch_kernel_model_update_fast.R scratch/scratch_kernel_product.R scratch/scratch_kernels_rcpp.R scratch/scratch_noiseless.R scratch/scratch_plot_LOO.R scratch/scratch_pred_var_add_points.R scratch/scratch_speedupgrad.R scratch/scratch_trend.R scratch/solvewithchol.R scratch/test_kernel_model.R scratch/test_kernel_model_with_profile.R

src/GauPro_init.c

src/Gaussian_deviance.cpp

src/Gaussian_hessian.cpp

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/arma_cube_vec_multiply.cpp

src/armadillotest.cpp

src/armadillotest2.cpp

src/corr.h

src/corr_cubic_matrix.cpp

src/corr_exponential_matrix.cpp

src/corr_gauss_dCdX.cpp

src/corr_gauss_matrix.cpp

src/corr_latentfactor_matrix.cpp

src/corr_matern32_matrix.cpp

src/corr_matern52_matrix.cpp

src/corr_orderedfactor_matrix.cpp

src/deviance.cpp

src/deviance_fngr.cpp

src/deviance_grad.cpp

src/gradfuncarray.cpp

src/pred_mean.cpp

tests/testthat.R tests/testthat/test_1D.R tests/testthat/test_Gauss_GauPro_LOO.R tests/testthat/test_kernel_model_LOO.R tests/testthat/test_kernel_model_and_kernels.R tests/testthat/test_kernel_model_grad.R tests/testthat/test_kernel_model_trend.R tests/testthat/test_kernels_right_type.R

tools/README-combine_periodic-1.png

tools/README-diamond_construct_kernel_fit-1.png

tools/README-kernelexponential-1.png

tools/README-kernelmatern52-1.png

tools/README-plot_dm-1.png

tools/README-plotdeviance-1.png

tools/README-plotsawtooth-1.png

tools/README-plotsawtooth-2.png

tools/README-plotsine-1.png

tools/README-trends-1.png

vignettes/CrossValidationErrorCorrection.R vignettes/CrossValidationErrorCorrection.Rmd

vignettes/CrossValidationErrorCorrection.html

vignettes/GauPro.R vignettes/GauPro.Rmd

vignettes/GauPro.html

vignettes/IntroductionToGPs.R vignettes/IntroductionToGPs.Rmd

vignettes/IntroductionToGPs.html

vignettes/derivatives.R vignettes/derivatives.Rmd

vignettes/derivatives.html

vignettes/surface_derivatives.R vignettes/surface_derivatives.Rmd

vignettes/surface_derivatives.html

CollinErickson/GauPro documentation built on March 25, 2024, 11:20 p.m.