Man pages for Como-DTC-Collaboration/como-models
A Suite of CoMo Models
| agedemographics_by_country | agedemographics_by_country |
| check | Checks that the format of the InterventionParameters is... |
| contact_all_rural | contact_all_rural |
| contact_all_urban | contact_all_urban |
| contact_home | contact_home |
| contact_other | contact_other |
| contact_rates | Retrieves contact rates of SEIR model. |
| contact_rates-set | Setter method for contact matrices, or contact rates... |
| contact_school | contact_school |
| contact_work | contact_work |
| country_codetoname | country_codetoname |
| country_demog | Retrieves age demographics, if provided, of SEIR model. |
| country_demog-set | Setter method for demographic data for urban and rural... |
| covid_transmission_parameters | Returns transmission parameter values for gamma, mu, kappa... |
| fraction_rural | Retrieves fraction of the population that lives in a rural... |
| infection_fatality_ratio | infection_fatality_ratio |
| initial_cases_deaths | Retrieves initial cases and deaths of SEIRD_RU model. |
| initial_conditions | Retrieves initial conditions of a class within comomodels... |
| initial_conditions-set | Set initial conditions of a class within comomodels package. |
| intervention_parameters | Retrieves intervention parameters of SEIRDV or... |
| InterventionParameters-class | An S4 object representing the InterventionParameters, |
| intervention_parameters-set | Set intervention parameters of the SEIRV or SEIRDAge model. |
| intervention_protocol | Creates protocols for the interventions using parameters of... |
| interventions | Retrieves interventions of age-structured SEIRDV model. |
| interventions-set | Setter method for intervention of the age-structured SEIRV... |
| ode_structure_diagram | Plots model structure for a model object |
| percentrural_by_country | percentrural_by_country |
| population | population |
| R0 | Calculates basic reproduction number |
| run | Solves ODEs for a given model |
| SEIaImIsRD-class | An S4 object representing the SEIaImIsRD. |
| SEIRDAge-class | An S4 object representing the SEIRDAge. |
| SEIRD_BD-class | An S4 object representing the SEIRD_BD model. |
| SEIRD-class | An S4 object representing the SEIRD. |
| SEIRD_CT-class | An S4 object representing the SEIRD_CT. |
| SEIRDNPIAge-class | Defines an age-structured SEIR model with non-pharmaceutical... |
| SEIRD_RU-class | An S4 object representing the SEIRD_RU. |
| SEIRDVAge-class | An S4 object representing the SEIRDVAge. |
| SEIRDV-class | An S4 object representing the SEIRDV. |
| SEmIRD-class | An S4 object representing the SEmIRD. |
| SimulationParameters-class | An S4 object representing the SimulationParameters. |
| stack_intervention_coverages | Creates stacks of interventions using parameters of the... |
| tanh_coverage_smoother | Smoother function for the curve of the interventions. Used to... |
| transmission_parameters | Retrieves transmission parameters of a class within... |
| transmission_parameters-set | Set transmission parameters for a class within comomodels... |
