run: Solves ODEs for a given model

In Como-DTC-Collaboration/como-models: A Suite of CoMo Models

Solves ODEs for a given model

Description

Solves ODEs of a model class within comomodels package and returns solutions at the time points specified using a specified integration method. Numerical solution of the ODEs is carried out by the deSolve package.

Usage

run(object, times = seq(0, 100, by = 1), solve_method = "lsoda", ...)

Arguments

object	an object of a class within the comomodels
times	(double) a vector of time points at which the solution to the system of ODEs should be returned. Default time series is seq(0, 100, by = 1)
solve_method	(string) a string specifying the chosen numerical integration method for solving the ode system. Default is "lsoda" which is also the default for the ode function in the deSolve package used in this function
...	other parameters

Value

a named list of two dataframes: 'states' which describes the time evolution of compartment proportions; and 'changes' which describes the time evolution of daily quantities like cases and deaths

Como-DTC-Collaboration/como-models documentation built on May 22, 2022, 9:33 a.m.