dot-processChiapetName: Function to process names relating to interactions stored in...

.processChiapetNameR Documentation

Function to process names relating to interactions stored in bed12 formats.

Description

In bed(n) formats interaction data cannot be stored directly due to the inability of the format to handle trans-interactions. It is only capable of storing cis-interactions through the use of blockStarts and blockEnds. As such the information is typically stored as a string of the format chr1:start1..end1-chr2:start2..end2,N (e.g. \'chr1:3268539..3269061-chr10:103124111..103124631,4\'.). This function takes a vector of these strings and converts them to a data.frame.

Usage

.processChiapetName(x)

Arguments

x

a vector of names stored in the bed file

Value

a data.frame containing all of the processed information


ComputationalRegulatoryGenomicsICL/GenomicInteractions documentation built on April 16, 2022, 4:09 a.m.