dot-processChiapetName: Function to process names relating to interactions stored in...
In ComputationalRegulatoryGenomicsICL/GenomicInteractions: Utilities for handling genomic interaction data
.processChiapetName R Documentation
Function to process names relating to interactions stored in bed12 formats.
Description
In bed(n) formats interaction data cannot be stored directly due to the inability of the format to handle
trans-interactions. It is only capable of storing cis-interactions through the use of blockStarts and blockEnds.
As such the information is typically stored as a string of the format chr1:start1..end1-chr2:start2..end2,N
(e.g. \'chr1:3268539..3269061-chr10:103124111..103124631,4\'.). This function takes a vector of these strings
and converts them to a data.frame.
Usage
.processChiapetName(x)
Arguments
x
a vector of names stored in the bed file
Value
a data.frame containing all of the processed information
ComputationalRegulatoryGenomicsICL/GenomicInteractions documentation built on April 16, 2022, 4:09 a.m.
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| .processChiapetName | R Documentation |
Function to process names relating to interactions stored in bed12 formats.
Description
In bed(n) formats interaction data cannot be stored directly due to the inability of the format to handle trans-interactions. It is only capable of storing cis-interactions through the use of blockStarts and blockEnds. As such the information is typically stored as a string of the format chr1:start1..end1-chr2:start2..end2,N (e.g. \'chr1:3268539..3269061-chr10:103124111..103124631,4\'.). This function takes a vector of these strings and converts them to a data.frame.
Usage
.processChiapetName(x)
Arguments
x |
a vector of names stored in the bed file |
Value
a data.frame containing all of the processed information
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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