inner_relPlot: inner_relPLot

Description Usage Arguments Value Examples

View source: R/plot-methods.R

Description

inner_relPLot

Usage

1
inner_relPlot(mbac, comp2plot = c(1, 2), ...)

Arguments

mbac

Object of class mbac generated by *MultiBaC* or *genModelList*.

comp2plot

Indicates which components are plotted. Default is "c(1,2)", which means that just the inner relation plot of components 1 and 2 are shown. If more components are indicated, the function will return as many plots as needed to show all the components.

...

Other graphical parameters

Value

Inner relation plot for PLS models is displayed.

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
data('multiyeast')

my_mbac <- createMbac (inputOmics = list(A.rna, A.gro, B.rna, B.ribo, C.rna, C.par),
                       batchFactor = c("A", "A", "B", "B", "C", "C"),
                       experimentalDesign = list("A" =  c("Glu+", "Glu+",
                       "Glu+", "Glu-", "Glu-", "Glu-"),
                       "B" = c("Glu+", "Glu+", "Glu-", "Glu-"),
                       "C" = c("Glu+", "Glu+", "Glu-", "Glu-")),
                       omicNames = c("RNA", "GRO", "RNA", "RIBO", "RNA", "PAR"))

my_final_mbac <- MultiBaC (my_mbac,
                           test.comp = NULL, scale = FALSE,
                           center = TRUE, crossval = NULL,
                           Variability = 0.90,
                           Interaction = TRUE ,
                           showplot = FALSE,
                           showinfo = FALSE)

inner_relPlot (my_final_mbac)

ConesaLab/MultiBaC documentation built on Jan. 24, 2022, 5:17 a.m.