inner_relPlot: inner_relPLot

In ConesaLab/MultiBaC: Multiomic Batch effect Correction

Description

inner_relPLot

Usage

inner_relPlot(mbac, comp2plot = c(1, 2), ...)

Arguments

mbac	Object of class mbac generated by *MultiBaC* or *genModelList*.
comp2plot	Indicates which components are plotted. Default is "c(1,2)", which means that just the inner relation plot of components 1 and 2 are shown. If more components are indicated, the function will return as many plots as needed to show all the components.
...	Other graphical parameters

Value

Inner relation plot for PLS models is displayed.

Examples

data('multiyeast')

my_mbac <- createMbac (inputOmics = list(A.rna, A.gro, B.rna, B.ribo, C.rna, C.par),
                       batchFactor = c("A", "A", "B", "B", "C", "C"),
                       experimentalDesign = list("A" =  c("Glu+", "Glu+",
                       "Glu+", "Glu-", "Glu-", "Glu-"),
                       "B" = c("Glu+", "Glu+", "Glu-", "Glu-"),
                       "C" = c("Glu+", "Glu+", "Glu-", "Glu-")),
                       omicNames = c("RNA", "GRO", "RNA", "RIBO", "RNA", "PAR"))

my_final_mbac <- MultiBaC (my_mbac,
                           test.comp = NULL, scale = FALSE,
                           center = TRUE, crossval = NULL,
                           Variability = 0.90,
                           Interaction = TRUE ,
                           showplot = FALSE,
                           showinfo = FALSE)

inner_relPlot (my_final_mbac)

ConesaLab/MultiBaC documentation built on Jan. 24, 2022, 5:17 a.m.