Description Usage Arguments Details Author(s) See Also Examples

plot a transition matrix, from transmat. Locations can be supplied for the nodes, however, if not then the nodes are aligned in a circle.

1 |

`Trans` |
a n x n matrix with count data representing the number of transistions from each state to each other states |

`locs` |
A three column matrix or dataframe. column one is the station names in the same order as rownames in Trans. The second column is the y coordinates, and column three is the x coordinates. if not provided data locations will be provided in a sphere |

`bubsize` |
vector of length two representing the cex parameter of the minimum and maximum node locations |

`lims.b` |
if supplied a vector of length two representing the count data representing the minimum and maximum bub sizes, else defaults to minimum and maximum observed in the data |

`bub.pch` |
Character type of the nodes |

`bub.col` |
color of the nodes |

`bub.bg` |
color of the nodes background |

`bubsqrt` |
should the count data for the nodes be square root transformed |

`linesize` |
minimum and maximum line widths |

`lims.l` |
if supplied a vector of length two representing the count data representing the minimum and maximum line widths, else defaults to minimum and maximum observed in the data |

`line.col` |
color of the lines |

`bend` |
the amount to bend the transition lines. The porportion of distance between each node that the line will be maximumly away from the straight path. If 0 then lines are not bent |

`head` |
the length in inches of the head of the arrows, if 0 then lines are drawn with no arrow heads |

`linesqrt` |
should the transistion counts be square root transformed |

`add` |
should theis plot be added onto the current plotting surface. If set to true, recommended that you have supplied locs |

`xlim` |
vector of length two representing the minimum and maximum x coordinates of the plot |

`ylim` |
vector of length two representing the minimum and maximum y coordinates of the plot |

Can be plotted independantly. However, when locs are supplied can be added onto a map with add = true. Designed for representing these fish movements from passive acoustic telemetry

Connor F. White

transMat, legend.bub, legend.line

1 2 3 4 5 6 7 8 9 10 11 | ```
dat<-sample(c("A","B","C","D"),100,replace=TRUE)
x<-transMat(dat, States=c("A","B","C","D"))
transBub(x)
#If we want to supply locations for each node
locs<-data.frame(State=c("A","B","C","D"),y=rep(0,4),x=c(1:4))
transBub(x,locs=locs)
#If we want to supply the minimum and maximum values of the nodes
transBub(x,lims.b=c(0,40),lims.l=c(0,10))
``` |

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