context("filter definition")
skip_on_cran()
test_that("auk_species", {
species <- c("Canada Jay", "Pluvialis squatarola")
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd() %>%
auk_species(species)
# works correctly
expect_equal(ebd$filters$species,
c("Perisoreus canadensis", "Pluvialis squatarola"))
# add
ebd <- auk_species(ebd, "blue jay")
expect_equal(ebd$filters$species,
c("Cyanocitta cristata", "Perisoreus canadensis",
"Pluvialis squatarola"))
# no duplication
ebd <- auk_species(ebd, rep(species, 2), replace = TRUE)
expect_equal(ebd$filters$species,
c("Perisoreus canadensis", "Pluvialis squatarola"))
# overwrite
ebd <- auk_species(ebd, "blue jay", replace = TRUE)
expect_equal(ebd$filters$species, "Cyanocitta cristata")
# raises error for bad species
expect_error(auk_species(ebd, "bluejay"))
expect_error(auk_species(ebd, ""))
expect_error(auk_species(ebd, NA))
# taxonomy versions
skip_if_offline()
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
ebd$file <- "ebd_relAug-2016.txt"
expect_warning(auk_species(ebd, "Canada Jay"))
# assuming ebird api is accessible, using 2016 taxonomy should work
res <- tryCatch(auk_species(ebd, "Canada Jay", taxonomy_version = 2016),
error = function(e) e)
if (!inherits(res, "error")) {
expect_s3_class(res, "auk_ebd")
}
})
test_that("auk_country", {
country <- c("CA", "United States", "mexico", "kosovo", "AC")
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd() %>%
auk_country(country)
# works correctly
expect_equal(ebd$filters$country, c("AC", "CA", "MX", "US", "XK"))
# add
ebd <- auk_country(ebd, "Belize")
expect_equal(ebd$filters$country, c("AC", "BZ", "CA", "MX", "US", "XK"))
# no duplication
ebd <- auk_country(ebd, rep(country, 2), replace = TRUE)
expect_equal(ebd$filters$country, c("AC", "CA", "MX", "US", "XK"))
# overwrite
ebd <- auk_country(ebd, "Belize", replace = TRUE)
expect_equal(ebd$filters$country, "BZ")
# just code
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd() %>%
auk_country("CA")
expect_equal(ebd$filters$country, "CA")
# just name
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd() %>%
auk_country("Canada")
expect_equal(ebd$filters$country, "CA")
# raises error for bad countries
expect_error(auk_country(ebd, "Atlantis"))
expect_error(auk_country(ebd, "AA"))
expect_error(auk_country(ebd, ""))
expect_error(auk_country(ebd, NA))
})
test_that("auk_state", {
state <- c("CR-P", "US-TX")
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd() %>%
auk_state(state)
# works correctly
expect_equal(ebd$filters$state, state)
# add
ebd <- auk_state(ebd, "CA-BC")
expect_equal(ebd$filters$state, c("CA-BC", "CR-P", "US-TX"))
# no duplication
ebd <- auk_state(ebd, rep(state, 2))
expect_equal(ebd$filters$state, c("CA-BC", "CR-P", "US-TX"))
# overwrite
ebd <- auk_state(ebd, "CA-BC", replace = TRUE)
expect_equal(ebd$filters$state, "CA-BC")
# raises error for bad states
expect_error(auk_state(ebd, "US-XX"))
expect_error(auk_state(ebd, "AA-AA"))
expect_error(auk_state(ebd, ""))
expect_error(auk_state(ebd, NA))
})
test_that("auk_county", {
county <- c("CA-ON-NG", "US-NY-109")
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd() %>%
auk_county(county)
# works correctly
expect_equal(ebd$filters$county, county)
# add
ebd <- auk_county(ebd, "US-TX-505")
expect_equal(ebd$filters$county, c("CA-ON-NG", "US-NY-109", "US-TX-505"))
# no duplication
ebd <- auk_county(ebd, rep(county, 2))
expect_equal(ebd$filters$county, c("CA-ON-NG", "US-NY-109", "US-TX-505"))
# overwrite
ebd <- auk_county(ebd, "US-NY-109", replace = TRUE)
expect_equal(ebd$filters$county, "US-NY-109")
# raises error for bad counties
expect_error(auk_county(ebd, NA))
})
test_that("auk_country/state/county mutually exclusive", {
county <- "US-NY-109"
state <- c("CR-P", "US-TX")
country <- c("Costa Rica", "US")
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd() %>%
auk_state(state)
expect_length(ebd$filters$country, 0)
expect_length(ebd$filters$state, 2)
expect_length(ebd$filters$county, 0)
ebd <- auk_country(ebd, country)
expect_length(ebd$filters$country, 2)
expect_length(ebd$filters$state, 0)
expect_length(ebd$filters$county, 0)
ebd <- auk_county(ebd, county)
expect_length(ebd$filters$country, 0)
expect_length(ebd$filters$state, 0)
expect_length(ebd$filters$county, 1)
ebd <- auk_state(ebd, state)
expect_length(ebd$filters$country, 0)
expect_length(ebd$filters$state, 2)
expect_length(ebd$filters$county, 0)
})
test_that("auk_bcr", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd() %>%
auk_bcr(bcr = 24)
# works correctly
expect_equal(ebd$filters$bcr, 24)
# multiple bcrs
ebd <- auk_bcr(ebd, bcr = c(24, 22))
expect_equal(ebd$filters$bcr, c(22, 24))
# raises error for bad input
expect_error(auk_bcr(ebd, "22"))
expect_error(auk_bcr(ebd, 2.2))
expect_error(auk_bcr(ebd, 0))
expect_error(auk_bcr(ebd, 100))
})
test_that("auk_bbox", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
# works correctly
e <- c(-125, 37, -120, 52)
ebd <- auk_bbox(ebd, e)
expect_equal(ebd$filters$bbox, e)
# overwrite
e <- c(0, 0, 1, 1)
ebd <- auk_bbox(ebd, e)
expect_equal(ebd$filters$bbox, e)
# invalid lat
expect_error(auk_bbox(ebd, c(0, -91, 1, 1)))
expect_error(auk_bbox(ebd, c(0, -90, 1, 91)))
expect_error(auk_bbox(ebd, c(0, 1, 1, 0)))
expect_error(auk_bbox(ebd, c(0, 0, 1, 0)))
# invalid lng
expect_error(auk_bbox(ebd, c(-181, 0, 1, 1)))
expect_error(auk_bbox(ebd, c(-180, 0, 181, 1)))
expect_error(auk_bbox(ebd, c(1, 0, 0, 1)))
expect_error(auk_bbox(ebd, c(0, 0, 0, 1)))
})
test_that("auk_year", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
# character input
y <- c(2010, 2012)
ebd <- auk_year(ebd, y)
expect_equivalent(ebd$filters$year, y)
# invalid year format
expect_error(auk_year(ebd, 1000))
expect_error(auk_date(ebd, "2010"))
expect_error(auk_date(ebd, NA))
expect_error(auk_date(ebd, 2010.1))
})
test_that("auk_date", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
# character input
d <- c("2015-01-01", "2015-12-31")
ebd <- auk_date(ebd, d)
expect_equivalent(ebd$filters$date, d)
expect_true(!attr(ebd$filters$date, "wildcard"))
# date input
ebd <- auk_date(ebd, as.Date(d))
expect_equivalent(ebd$filters$date, d)
# single day is ok
d <- c("2015-01-01", "2015-01-01")
ebd <- auk_date(ebd, d)
expect_equivalent(ebd$filters$date, d)
# overwrite
d <- c("2010-01-01", "2010-12-31")
ebd <- auk_date(ebd, d)
expect_equivalent(ebd$filters$date, d)
# invalid date format
expect_error(auk_date(ebd, c("01-01-2015", "2015-12-31")))
expect_error(auk_date(ebd, c("2015-00-01", "2015-12-31")))
expect_error(auk_date(ebd, c("2015-01-32", "2015-12-31")))
expect_error(auk_date(ebd, c("a", "b")))
expect_error(auk_date(ebd, "2010-01-01"))
# dates not sequential
expect_error(auk_date(ebd, c("2015-12-31", "2015-01-01")))
})
test_that("auk_date wildcards", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
d <- c("*-05-01", "*-06-30")
ebd <- auk_date(ebd, d)
expect_equivalent(ebd$filters$date, d)
expect_true(!attr(ebd$filters$date, "wrap"))
expect_true(attr(ebd$filters$date, "wildcard"))
# invalid date format
expect_error(auk_date(ebd, "*-01-01"))
expect_error(auk_date(ebd, c("*-05-01", "2012-06-30")))
# dates can wrap
wrapped <- auk_date(ebd, c("*-12-31", "*-01-01"))
expect_is(wrapped, "auk_ebd")
expect_true(attr(wrapped$filters$date, "wrap"))
expect_true(attr(wrapped$filters$date, "wildcard"))
})
test_that("auk_last_edited", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
# character input
d <- c("2015-01-01", "2015-12-31")
ebd <- auk_last_edited(ebd, d)
expect_equal(ebd$filters$last_edited, d)
# date input
ebd <- auk_last_edited(ebd, as.Date(d))
expect_equal(ebd$filters$last_edited, d)
# single day is ok
d <- c("2015-01-01", "2015-01-01")
ebd <- auk_last_edited(ebd, d)
expect_equal(ebd$filters$last_edited, d)
# overwrite
d <- c("2010-01-01", "2010-12-31")
ebd <- auk_last_edited(ebd, d)
expect_equal(ebd$filters$last_edited, d)
# invalid date format
expect_error(auk_last_edited(ebd, c("01-01-2015", "2015-12-31")))
expect_error(auk_last_edited(ebd, c("2015-00-01", "2015-12-31")))
expect_error(auk_last_edited(ebd, c("2015-01-32", "2015-12-31")))
expect_error(auk_last_edited(ebd, c("a", "b")))
expect_error(auk_last_edited(ebd, "2010-01-01"))
expect_error(auk_last_edited(ebd, "2015-01-01"))
expect_error(auk_last_edited(ebd, c("2015-01-01", "2015-02-01",
"2015-03-01")))
# dates not sequential
expect_error(auk_last_edited(ebd, c("2015-12-31", "2015-01-01")))
})
test_that("auk_protocol", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd() %>%
auk_protocol("Stationary")
# works correctly
expect_equal(ebd$filters$protocol, "Stationary")
# multiple protocols
ebd <- auk_protocol(ebd, c("Stationary", "Traveling"))
expect_equal(ebd$filters$protocol, c("Stationary", "Traveling"))
# raises error for bad input
expect_error(auk_protocol(ebd, "STATIONARY"))
expect_error(auk_protocol(ebd, 2))
expect_error(auk_protocol(ebd, ""))
expect_error(auk_protocol(ebd, NA))
})
test_that("auk_project", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd() %>%
auk_project("EBIRD")
# works correctly
expect_equal(ebd$filters$project, "EBIRD")
# multiple projects
ebd <- auk_project(ebd, c("EBIRD", "EBIRD_MEX"))
expect_equal(ebd$filters$project, c("EBIRD", "EBIRD_MEX"))
# raises error for bad input
expect_error(auk_project(ebd, "EBIRD MEX"))
expect_error(auk_project(ebd, "ebird_mex"))
expect_error(auk_project(ebd, 2))
expect_error(auk_project(ebd, ""))
expect_error(auk_project(ebd, NA))
})
test_that("auk_time", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
# works correctly
t <- c("06:00", "08:00")
ebd <- auk_time(ebd, t)
expect_equal(ebd$filters$time, t)
# overwrite
t <- c("10:00", "12:00")
ebd <- auk_time(ebd, t)
expect_equal(ebd$filters$time, t)
# invalid time format
expect_error(auk_time(ebd, c("10:00AM", "12:00")))
expect_error(auk_time(ebd, c("23:00", "25:00")))
expect_error(auk_time(ebd, c("07:00", "08:61")))
expect_error(auk_time(ebd, c("07.00", "08.00")))
expect_error(auk_time(ebd, "07:00"))
expect_error(auk_time(ebd, c("07:00", "08:00", "09:00")))
expect_error(auk_time(ebd, c("a", "b")))
# times not sequential
expect_error(auk_time(ebd, c("08:00", "07:00")))
})
test_that("auk_duration", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
# works correctly
d <- c(0, 60)
ebd <- auk_duration(ebd, d)
expect_equal(ebd$filters$duration, d)
# overwrite
d <- c(60, 120)
ebd <- auk_duration(ebd, d)
expect_equal(ebd$filters$duration, d)
# invalid duration format
expect_error(auk_duration(ebd, c("0", "60")))
expect_error(auk_duration(ebd, 0))
expect_error(auk_duration(ebd, c(0, 60, 120)))
expect_error(auk_duration(ebd, c(-10, 10)))
# durations not sequential
expect_error(auk_duration(ebd, c(60, 30)))
})
test_that("auk_distance", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
# works correctly
d <- c(0, 10)
ebd <- auk_distance(ebd, d)
expect_equal(ebd$filters$distance, d)
# overwrite
d <- c(5, 10)
ebd <- auk_distance(ebd, d)
expect_equal(ebd$filters$distance, d)
# miles conversion
d <- c(5, 10)
ebd_km <- auk_distance(ebd, d)
ebd_miles <- auk_distance(ebd, 0.621371 * d, distance_units = "miles")
expect_equal(round(ebd_km$filters$distance, 1),
round(ebd_miles$filters$distance, 1))
# invalid distance format
expect_error(auk_distance(ebd, c("0", "10")))
expect_error(auk_distance(ebd, 0))
expect_error(auk_distance(ebd, c(0, 5, 10)))
expect_error(auk_distance(ebd, c(-10, 10)))
# distances not sequential
expect_error(auk_distance(ebd, c(10, 5)))
})
test_that("auk_complete", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
# works correctly
expect_equal(ebd$filters$complete, FALSE)
ebd <- auk_complete(ebd)
expect_equal(ebd$filters$complete, TRUE)
})
test_that("auk_breeding", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
# works correctly
expect_equal(ebd$filters$complete, FALSE)
ebd <- auk_complete(ebd)
expect_equal(ebd$filters$complete, TRUE)
})
test_that("auk_observer", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
# works with character
obs <- "obsr313215"
ebd <- auk_observer(ebd, obs)
expect_equal(ebd$filters$observer, obs)
# works with integer
obs_int <- 313215
ebd <- auk_observer(ebd, obs_int)
expect_equal(ebd$filters$observer, obs)
})
test_that("auk_exotic", {
ebd <- system.file("extdata/ebd-sample.txt", package = "auk") %>%
auk_ebd()
# works with character
ex_code <- ""
ebd <- auk_exotic(ebd, ex_code)
expect_equal(ebd$filters$exotic, ex_code)
# works with integer
ex_code <- c("", "X")
ebd <- auk_exotic(ebd, ex_code)
expect_equal(ebd$filters$exotic, ex_code)
})
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