get_genotypemap: Get and format genotype map of an experiment
In CougPhenomics/cppcutils: Utilities for Compact Plants Phenomics Center (CPPC)
Description
Usage
Arguments
Details
Value
Description
Get and format genotype map of an experiment
Usage
1
get_genotypemap(fn, wtcode = "WT", gtypeorder = NULL)
Arguments
fn
filename of genotypemap usually stored at data/genotype_map.csv in the experiment folder
wtcode
string used to identify wild-type
gtypeorder
vector of genotype levels in custom order
Details
The standard columns for this file are plantbarcode, roi, gtype and should map each unique position in the hotel to a genotype
the genotypemap is part of every experiment and maps the barcode and roi # with the genotype.
Value
tibble, with gtype as a factor.
CougPhenomics/cppcutils documentation built on Oct. 14, 2020, 5:41 a.m.
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Description Usage Arguments Details Value
Description
Get and format genotype map of an experiment
Usage
1 | get_genotypemap(fn, wtcode = "WT", gtypeorder = NULL)
|
Arguments
fn |
filename of genotypemap usually stored at data/genotype_map.csv in the experiment folder |
wtcode |
string used to identify wild-type |
gtypeorder |
vector of genotype levels in custom order |
Details
The standard columns for this file are plantbarcode, roi, gtype and should map each unique position in the hotel to a genotype the genotypemap is part of every experiment and maps the barcode and roi # with the genotype.
Value
tibble, with gtype as a factor.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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