summarise_phenotypes: Summarise phenotypes

In CougPhenomics/cppcutils: Utilities for Compact Plants Phenomics Center (CPPC)

Description

Summarise phenotypes

Usage

summarise_phenotypes(
  dF = NULL,
  phenotype = NULL,
  addgrp = NULL,
  statistic = list(med = median, sd = sd, se = se),
  na.rm = TRUE
)

Arguments

dF	dataframe of phenotypes for every individual
phenotype	column name or vector of column names of phenotypes to summarise. unquoted.
addgrp	additional columns to group by. column name or vector of column names
statistic	named list of function(s) to summarise with. name of your list entry will be used to name the new column
na.rm	logical. remove rows with NA. default is TRUE.

Details

the default is to group by gtype, idate, jobdate. For PSII data you need to additionally specify parameter

Value

dataframe with summary columns named as {statistic}_{phenotype}

CougPhenomics/cppcutils documentation built on Oct. 14, 2020, 5:41 a.m.