Description Usage Arguments Author(s)
Project population forward pyears given current numbers-at-age and total mortality, etc for the future years
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 | popdynCPP(
nareas,
maxage,
Ncurr,
pyears,
M_age,
Asize_c,
MatAge,
WtAge,
Vuln,
Retc,
Prec,
movc,
SRrelc,
Effind,
Spat_targc,
hc,
R0c,
SSBpRc,
aRc,
bRc,
Qc,
Fapic,
maxF,
MPA,
control,
SSB0c,
plusgroup = 0L
)
|
nareas |
The number of spatial areas |
maxage |
The maximum age |
Ncurr |
A numeric matrix (maxage, nareas) with current numbers-at-age in each area |
pyears |
The number of years to project the population forward |
M_age |
Numeric matrix (maxage, pyears) with natural mortality by age and year |
Asize_c |
Numeric vector (length nareas) with size of each area |
MatAge |
Numeric vector with proportion mature by age |
WtAge |
Numeric matrix (maxage, pyears) with weight by age and year |
Vuln |
Numeric matrix (maxage, pyears) with vulnerability by age and year |
Retc |
Numeric matrix (maxage, pyears) with retention by age and year |
Prec |
Numeric vector (pyears) with recruitment error |
movc |
Numeric array (nareas by nareas) with the movement matrix |
SRrelc |
Integer indicating the stock-recruitment relationship to use (1 for Beverton-Holt, 2 for Ricker) |
Effind |
Numeric vector (length pyears) with the fishing effort by year |
Spat_targc |
Integer. Spatial targetting |
hc |
Numeric. Steepness of stock-recruit relationship |
R0c |
Numeric vector of length nareas with unfished recruitment by area |
SSBpRc |
Numeric vector of length nareas with unfished spawning per recruit by area |
aRc |
Numeric. Ricker SRR a value by area |
bRc |
Numeric. Ricker SRR b value by area |
Qc |
Numeric. Catchability coefficient |
Fapic |
Numeric. Apical F value |
maxF |
A numeric value specifying the maximum fishing mortality for any single age class |
MPA |
Spatial closure by year and area |
control |
Integer. 1 to use q and effort to calculate F, 2 to use Fapic (apical F) and vulnerablity to calculate F. |
plusgroup |
Integer. Include a plus-group (1) or not (0)? |
SSBcurr |
A numeric vector of length nareas with the current spawning biomass in each area |
A. Hordyk
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