API for DLMtool/DLMtool
Data-Limited Methods Toolkit

Global functions
AAVE	Man page Source code
AAVY	Man page Source code
Add_predictive	Source code
Albacore	Man page
Atlantic_mackerel	Man page
AvC	Man page Source code
AvC_MLL	Man page Source code
AvC_plot	Source code
BK	Man page Source code
BK_CC	Man page Source code
BK_ML	Man page Source code
BK_plot	Source code
BlankSelPlot	Man page Source code
Blow_opt	Man page Source code
Blue_shark	Man page
Bluefin_tuna	Man page
Bluefin_tuna_WAtl	Man page
Butterfish	Man page
CALsimp	Man page Source code
CC	Man page Source code
CC1	Man page Source code
CC2	Man page
CC3	Man page
CC4	Man page
CC5	Man page
COSEWIC_Blow	Man page Source code
COSEWIC_Dplot	Man page Source code
COSEWIC_Hplot	Man page Source code
COSEWIC_Pplot	Man page Source code
COSEWIC_report	Man page Source code
COSEWIC_tab	Man page Source code
COSEWIC_tab_formatted	Man page Source code
CSRA	Man page Source code
CSRAfunc	Man page Source code
CalcMPDynamics	Man page Source code
CalcMSYRefs	Source code
CalcUnfishedRefs	Source code
Can	Man page Source code
CanMP	Man page Source code
Cant	Man page Source code
CheckSelect	Source code
China_rockfish	Man page
Chk	Source code
ChkObj	Man page Source code
ChkYrs	Man page Source code
Choose	Man page
ChooseEffort	Man page Source code
ChooseL5	Source code
ChooseLFS	Source code
ChooseM	Man page Source code
ChooseSelect	Man page Source code
ChooseVmaxlen	Source code
Cobia	Man page
CompSRA	Man page Source code
CompSRA4010	Man page Source code
CompSRA_	Man page Source code
CompSRA_plot	Source code
Converge	Man page Source code
Cos_thresh_tab	Man page Source code
Cplot	Man page Source code
CurC	Man page
DAAC	Man page Source code
DBSRA	Man page Source code
DBSRA4010	Man page Source code
DBSRA_	Man page Source code
DBSRA_40	Man page Source code
DBSRA_plot	Source code
DBSRAopt	Man page Source code
DCAC	Man page Source code
DCAC4010	Man page Source code
DCAC_	Man page Source code
DCAC_40	Man page Source code
DCAC_ML	Man page Source code
DCAC_plot	Source code
DCACs	Man page Source code
DD	Man page Source code
DD4010	Man page Source code
DD_	Man page Source code
DD_R	Man page Source code
DD_plot	Source code
DDe	Man page Source code
DDe75	Man page Source code
DDes	Man page Source code
DFO_Dplot	Source code
DFO_Kobe	Source code
DFO_Kobe_TS	Source code
DFO_bar	Man page Source code
DFO_cbar	Source code
DFO_cosplot	Source code
DFO_hist	Man page Source code
DFO_plot	Man page Source code
DFO_plot2	Man page Source code
DFO_proj	Man page Source code
DFO_quant	Man page Source code
DFO_report	Man page Source code
DFO_spider	Man page Source code
DFO_tab	Man page Source code
DFO_tab_formatted	Man page Source code
DLMDataDir	Man page Source code
DLMdiag	Man page Source code
DLMenv	Man page
DLMextra	Man page Source code
DLMtool	Man page
DLMtool-package	Man page
DTe40	Man page Source code
DTe50	Man page Source code
Data-class	Man page
Data-class-objects	Man page
Data2csv	Man page Source code
DataDescription	Man page
DataInit	Man page Source code
Data_xl	Man page Source code
DecE_Dom	Man page
DecE_HDom	Man page
DecE_NDom	Man page
DepF	Man page Source code
Dom	Man page Source code
DynF	Man page Source code
DynF_plot	Source code
EtargetLopt	Man page Source code
EtargetLopt_plot	Source code
Example_datafile	Man page
FMSYref	Man page Source code
FMSYref50	Man page Source code
FMSYref75	Man page Source code
Fadapt	Man page Source code
Fdem	Man page Source code
Fdem_	Man page Source code
Fdem_CC	Man page Source code
Fdem_ML	Man page Source code
Fdem_plot	Source code
Fease	Man page Source code
FilterSmooth	Man page Source code
FlatE_Dom	Man page
FlatE_HDom	Man page
FlatE_NDom	Man page
Fleet-class	Man page
Fleet-class-objects	Man page
FleetDescription	Man page
Fratio	Man page Source code
Fratio4010	Man page Source code
Fratio_	Man page Source code
Fratio_CC	Man page Source code
Fratio_ML	Man page Source code
Fratio_plot	Source code
GB_CC	Man page Source code
GB_CC_plot	Source code
GB_slope	Man page Source code
GB_slope_plot	Source code
GB_target	Man page Source code
GB_target_plot	Source code
Gcontrol	Man page Source code
Gcontrol_plot	Source code
Generic_DecE	Man page
Generic_FlatE	Man page
Generic_Fleet	Man page
Generic_IncE	Man page
Generic_Obs	Man page
Growth2OM	Man page Source code
Gulf_blue_tilefish	Man page
HDAAC	Man page Source code
Herring	Man page
Hist-class	Man page
ICI	Man page Source code
ICI2	Man page Source code
ICI_plot	Source code
IOTC_plot	Man page Source code
IT10	Man page
IT5	Man page Source code
ITM	Man page Source code
IT_	Man page Source code
ITe10	Man page Source code
ITe5	Man page Source code
ITe_plot	Source code
Imp-class	Man page
Imp-class-objects	Man page
ImpDescription	Man page
Imprecise_Biased	Man page
Imprecise_Unbiased	Man page
IncE_HDom	Man page
IncE_NDom	Man page
Input	Man page Source code
Iratio	Man page Source code
Iratio_plot	Source code
Islope1	Man page Source code
Islope2	Man page
Islope3	Man page
Islope4	Man page
Islope_	Man page Source code
Islope_plot	Source code
Itarget1	Man page Source code
Itarget1_MPA	Man page Source code
Itarget2	Man page
Itarget3	Man page
Itarget4	Man page
ItargetE1	Man page Source code
ItargetE2	Man page
ItargetE3	Man page
ItargetE4	Man page
Itarget_	Man page Source code
Itargeteff_	Man page Source code
Kplot	Man page
L2A	Man page Source code
L95target	Man page Source code
LBSPR	Man page Source code
LBSPR_	Man page Source code
LBSPR_MLL	Man page Source code
LBSPRgen	Man page Source code
LBSPRopt	Source code
LH2OM	Man page Source code
LHdatabase	Man page
LSRA	Man page Source code
LSRA2	Man page Source code
LSRA_MCMC_sim	Man page Source code
LSRA_cpp	Source code
LSRA_cppWrapper	Source code
LSRA_opt	Man page Source code
LSRA_opt_cpp	Man page Source code
LTY	Man page Source code
LW2OM	Man page Source code
LinInterp	Man page Source code
Low_Effort_Non_Target	Man page
Lratio_BHI	Man page Source code
Lratio_BHI2	Man page Source code
Lratio_BHI3	Man page Source code
Lratio_BHI_plot	Source code
LstepCC1	Man page Source code
LstepCC2	Man page
LstepCC3	Man page
LstepCC4	Man page
LstepCC_	Source code
LstepCE1	Man page Source code
LstepCE2	Man page
Ltarget1	Man page Source code
Ltarget2	Man page
Ltarget3	Man page
Ltarget4	Man page
LtargetE1	Man page Source code
LtargetE4	Man page
Ltarget_	Source code
MCD	Man page Source code
MCD4010	Man page Source code
MCD_plot	Source code
ML2D	Man page Source code
MLne	Source code
MPCheck	Source code
MPStats	Man page
MPtype	Man page Source code
MPurl	Man page Source code
MRnoreal	Man page Source code
MRreal	Man page Source code
MSC_rebuilding_zones	Source code
MSC_status_zones	Source code
MSC_status_zones_LTL	Source code
MSCplot	Source code
MSE-class	Man page
MSEDescription	Man page
MSYCalcs	Man page Source code
Mackerel	Man page
NAor0	Man page Source code
NFref	Man page Source code
NOAA_plot	Man page
NOAA_plot2	Man page Source code
Needed	Man page Source code
OM-class	Man page
OMDescription	Man page
OMdoc	Man page Source code
OMexample	Man page Source code
OMinit	Man page Source code
Obs-class	Man page
Obs-class-objects	Man page
ObsDescription	Man page
ObsTSplot	Source code
OneRep	Man page Source code
OptionalSlots	Source code
Overages	Man page
P10	Man page Source code
P100	Man page
P50	Man page
PMLimit	Man page Source code
PMObj	Man page Source code
PMobj-class	Man page
PNOF	Man page Source code
PWhisker	Man page
Perfect_Imp	Man page
Perfect_Info	Man page
PerformanceMetric	Man page
Porgy	Man page
Pplot	Man page
Pplot2	Man page
Precise_Biased	Man page
Precise_Unbiased	Man page
Range	Man page Source code
Rcontrol	Man page Source code
Rcontrol2	Man page Source code
Rcontrol_plot	Source code
RealFease	Man page Source code
Rec-class	Man page
Red_snapper	Man page
Replace	Man page Source code
RepmissingVal	Source code
Report	Man page Source code
ReqData	Man page
Required	Man page Source code
Rockfish	Man page
SBT1	Man page Source code
SBT2	Man page Source code
SPMSY	Man page Source code
SPSRA	Man page Source code
SPSRA_	Man page Source code
SPSRA_ML	Man page Source code
SPSRA_plot	Source code
SPSRAopt	Man page Source code
SPmod	Man page Source code
SPslope	Man page Source code
SRAFMSY	Source code
SRAcomp	Man page Source code
SRAfunc	Source code
SRAsim	Man page Source code
STY	Man page
SampleCpars	Man page Source code
SampleFleetPars	Man page Source code
SampleImpPars	Man page Source code
SampleObsPars	Man page Source code
SampleStockPars	Man page Source code
Sense	Man page Source code
SimulatedData	Man page
Simulation_1	Man page
SketchFun	Man page Source code
SketchM	Source code
Snapper	Man page
Sole	Man page
StochasticSRA	Man page Source code
StochasticSRAcpp	Man page Source code
Stock-class	Man page
Stock-class-objects	Man page
StockDescription	Man page
Sub	Man page Source code
SubCpars	Man page Source code
SubOM	Man page Source code
TAC	Man page Source code
TACfilter	Man page Source code
TSKplot	Source code
TSplot	Source code
Target_All_Fish	Man page
Targeting_Small_Fish	Man page
Template	Source code
Thresh_tab	Man page Source code
Toothfish	Man page
Tplot	Man page Source code
Tplot2	Man page Source code
Tplot2_old	Man page
Tplot3	Man page Source code
Tplot_old	Man page
TradePlot	Man page Source code
TradePlot_old	Man page
Turing	Man page Source code
Uses	Man page Source code
VOI	Man page
VOI2	Man page
VOIplot	Man page
VOIplot2	Man page Source code
XL2Data	Man page Source code
XL2OM	Man page Source code
YPR	Man page Source code
YPR_	Man page Source code
YPR_CC	Man page Source code
YPR_ML	Man page Source code
YPR_plot	Source code
YPRopt	Man page Source code
Yield	Man page Source code
addMPs	Man page
addRealData	Source code
add_zones	Source code
add_zones_A	Source code
add_zones_bar	Source code
add_zones_bar_D	Source code
add_zones_bar_horiz	Source code
add_zones_bar_horiz_D	Source code
alphaconv	Man page Source code
applyAC	Source code
applyMP	Man page Source code
assign_DLMenv	Source code
avail	Man page Source code
barplot.MSE	Man page Source code
betaconv	Man page Source code
bheq	Source code
bhnoneq	Source code
bhnoneq_LL	Source code
biology_plots	Source code
boxplot.Data	Man page Source code
caa_plot	Source code
cal_plot	Source code
calcF	Source code
calcMean	Man page Source code
calcProb	Man page Source code
char.log-class	Man page
cheatsheets	Man page Source code
checkMSE	Man page Source code
combine	Source code
compplot	Man page Source code
condmet	Man page Source code
cparscheck	Man page Source code
curE	Man page Source code
curE75	Man page Source code
curE_plot	Source code
cv	Man page Source code
demofn	Man page Source code
demographic2	Man page Source code
derive_beta_par	Man page Source code
dev.mode	Source code
dnormal	Man page Source code
encircle	Source code
genSizeComp	Source code
genSizeCompWrap	Man page Source code
generateRes	Source code
getAFC	Man page Source code
getBlow	Man page Source code
getEffhist	Man page Source code
getFref3	Man page Source code
get_freq	Source code
getbeta	Source code
getclass	Man page Source code
getfifth	Man page Source code
getmov2	Man page Source code
getq3	Man page Source code
getr	Man page Source code
getsel	Man page Source code
gettaxa	Source code
gettempvar	Man page Source code
growth_plots	Source code
hist2	Man page Source code
iVB	Man page Source code
identifyPch	Source code
indfit	Source code
indfitwrap	Source code
initialize	Man page
initialize,DLM_general-method	Man page
initialize,Data-method	Man page
initialize,Fease-method	Man page
initialize,Fleet-method	Man page
initialize,MSE-method	Man page
initialize,OM-method	Man page
initialize,Obs-method	Man page
initialize,Stock-method	Man page
initialize-methods	Man page
joinData	Man page Source code
joinMSE	Man page Source code
join_plots	Man page Source code
label.class-class	Man page
lcs	Source code
makeDF	Source code
makeData	Source code
makeMeanMP	Man page Source code
makePerf	Man page Source code
makeTransparent	Man page
makeVec	Source code
match_slots	Source code
matlenlim	Man page Source code
matlenlim2	Man page Source code
mconv	Man page Source code
message	Source code Source code
metadatatable	Source code
minlenLopt1	Man page Source code
movfit_Rcpp	Man page Source code
myrunif	Source code
needed	Source code
optCPU	Man page Source code
optDfun	Source code
optDfunwrap	Source code
optMSY	Man page Source code
optMSY_eq	Man page Source code
optQ	Man page Source code
ourReefFish	Man page
plot.Data	Man page Source code
plot.Fleet	Man page Source code
plot.Hist	Man page Source code
plot.Imp	Man page Source code
plot.MSE	Man page Source code
plot.OM	Man page Source code
plot.Obs	Man page Source code
plot.Stock	Man page Source code
plot.character	Source code
plot.pars	Man page Source code
plotCAAdata	Source code
plotDep	Source code
plotEff	Source code
plotFleet	Man page Source code
plotFun	Man page Source code
plotGrowth	Source code
plotImp	Man page Source code
plotM	Man page Source code
plotM2	Source code
plotMPA	Man page Source code
plotMat	Source code
plotOFL	Man page Source code
plotOM	Man page Source code
plotObs	Man page Source code
plotQcv	Source code
plotRec	Source code
plotSelHists	Source code
plotSelect	Man page Source code
plotSlot	Source code
plotStock	Man page Source code
plotTSdata	Source code
plotText	Source code
plotquant	Source code
plotquant2	Source code
popdynCPP	Man page Source code
popdynOneTScpp	Man page Source code
predictLH	Man page Source code
prob.class-class	Man page
projectEq	Source code
range01	Source code
ref_plots	Source code
render_plot	Source code
replic8	Man page Source code
rnormSelect2	Source code
runCOSEWIC	Man page Source code
runInMP	Man page Source code
runMP	Man page Source code
runMSE	Man page Source code
runMSE_int	Source code
runMSEnomsg	Source code
run_parallel	Source code
sample_steepness2	Man page Source code
sampy	Man page Source code
sdconv	Man page Source code
select_plots	Source code
setup	Man page Source code
show	Source code
show,PMobj-method	Man page
show,Rec-method	Man page
simCAA	Man page Source code
simCAL	Man page Source code
size_lim_plot	Source code
slotlim	Man page Source code
split.along.dim	Source code
summary,Data-method	Man page
summary,MSE-method	Man page
tdlnorm	Man page Source code
tdnorm	Source code
testOM	Man page
tiny	Man page
tinyErr	Man page
tinyErr,OM-method	Man page
trlnorm	Man page Source code
ts_plots	Source code
updateData	Source code
updateMSE	Man page Source code
userguide	Man page Source code
userguide_link	Source code
validcpars	Man page Source code
which_maxC	Source code
wormplot	Man page
writeCSV	Man page Source code
writeCSV2	Source code
writeSection	Source code