tests/testthat/test-testMsigClustering.R
In DavisLaboratory/vissE: Visualising Set Enrichment Analysis Results
library(GSEABase)
library(msigdb)
test_that("geneset overlap computation works", {
#hallmark geneset
data("hgsc")
ov_ari = computeMsigOverlap(hgsc, thresh = 0.25, measure = 'ari')
ov_ig = computeMsigNetwork(ov_ari, hgsc)
grps = findMsigClusters(ov_ig)
expect_true(any(sapply(grps, function(x) all(grepl('ESTROGEN', x)))))
})
DavisLaboratory/vissE documentation built on Jan. 31, 2024, 5:02 a.m.
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library(GSEABase)
library(msigdb)
test_that("geneset overlap computation works", {
#hallmark geneset
data("hgsc")
ov_ari = computeMsigOverlap(hgsc, thresh = 0.25, measure = 'ari')
ov_ig = computeMsigNetwork(ov_ari, hgsc)
grps = findMsigClusters(ov_ig)
expect_true(any(sapply(grps, function(x) all(grepl('ESTROGEN', x)))))
})
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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