deseq2_analysis: Run DESeq2 analysis on RNA-seq count data

Description Usage Arguments

View source: R/deseq2_analysis.R

Description

Run DESeq2 analysis on RNA-seq count data

Usage

1
deseq2_analysis(metadata, species)

Arguments

metadata

list created by sanity_check and with raw count data stored in metadata$count$A and length-adjusted count data stored in metadata$count$B. Created as part of run_dea

species

character string specifying the name of the species. Only 'human', and 'mouse' are supported at present. [DEFAULT = human].


DelilahYM/rseqR_mod documentation built on Dec. 17, 2021, 4:11 p.m.