exploratory_analysis_deseq2: Exploratory analysis of DESeq2 data

In DelilahYM/rseqR_mod: RNA-seq data processing pipeline

Description

Exploratory analysis of DESeq2 data

Usage

exploratory_analysis_deseq2(dds, species, metadata)

Arguments

dds	DESeqDataSet object created by DESeq2::DESeq
species	character string specifying the name of the species. Only 'human', and 'mouse' are supported at present. [DEFAULT = human].
metadata	list created by sanity_check and with raw count data stored in metadata$count$A and length-adjusted count data stored in metadata$count$B. Created as part of run_dea

DelilahYM/rseqR_mod documentation built on Dec. 17, 2021, 4:11 p.m.