make_upset: Plot intersections of list of DE genes
In DelilahYM/rseqR_mod: RNA-seq data processing pipeline
Description
Usage
Arguments
Value
Description
Plot intersections of list of DE genes
Usage
1
make_upset(limma, edger, deseq2)
Arguments
limma
data.frame with the columns gene and padj or FDR; result of Limma-voom analysis
edger
data.frame with the columns gene and padj or FDR; result of edgeR analysis
deseq2
data.frame with the columns gene and padj or FDR; result of DESeq2 analysis
Value
An UpSet plot of gene intersections.
DelilahYM/rseqR_mod documentation built on Dec. 17, 2021, 4:11 p.m.
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Description Usage Arguments Value
Description
Plot intersections of list of DE genes
Usage
1 | make_upset(limma, edger, deseq2)
|
Arguments
limma |
data.frame with the columns gene and padj or FDR; result of Limma-voom analysis |
edger |
data.frame with the columns gene and padj or FDR; result of edgeR analysis |
deseq2 |
data.frame with the columns gene and padj or FDR; result of DESeq2 analysis |
Value
An UpSet plot of gene intersections.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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