Heat: Generates a heatmap from a table of data.

In Displayr/flipStandardCharts: Standard R interactive charts

Generates a heatmap from a table of data.

Description

This function wraps the Heatmap function in the rhtmlHeatmap package.

Usage

Heat(
  x,
  sort.rows = "None",
  sort.columns = "None",
  colors = c("#0066ff", "#ff0000"),
  standardization = "None",
  global.font.family = "Arial",
  global.font.color = "#000000",
  values.bounds.minimum = NULL,
  values.bounds.maximum = NULL,
  title = "",
  title.font.family = global.font.family,
  title.font.color = global.font.color,
  title.font.size = 16,
  subtitle = "",
  subtitle.font.family = global.font.family,
  subtitle.font.color = global.font.color,
  subtitle.font.size = 12,
  footer = "",
  footer.font.family = global.font.family,
  footer.font.color = global.font.color,
  footer.font.size = 12,
  x.title = "",
  x.title.font.family = global.font.family,
  x.title.font.color = global.font.color,
  x.title.font.size = 12,
  y.title = "",
  y.title.font.family = global.font.family,
  y.title.font.color = global.font.color,
  y.title.font.size = 12,
  x.tick.show = TRUE,
  x.tick.font.family = global.font.family,
  x.tick.font.color = global.font.color,
  x.tick.font.size = 10,
  y.tick.show = TRUE,
  y.tick.font.family = global.font.family,
  y.tick.font.color = global.font.color,
  y.tick.font.size = 10,
  legend.show = TRUE,
  legend.font.family = global.font.family,
  legend.font.color = global.font.color,
  legend.font.size = 10,
  data.label.show = TRUE,
  data.label.font.size = 10,
  data.label.font.family = global.font.family,
  data.label.format = "",
  data.label.prefix = "",
  data.label.suffix = "",
  hovertext.font.family = global.font.family,
  hovertext.font.size = 11,
  y.hovertext.format = data.label.format,
  y.hovertext.prefix = data.label.prefix,
  y.hovertext.suffix = data.label.suffix,
  left.columns = NULL,
  left.column.headings = "",
  right.columns = NULL,
  right.column.headings = ""
)

Arguments

x	A matrix of data to be displayed with values in the cells and optiona row and column labels.
sort.rows	Whether to sort rows by their averages or link as a dendrogram. Options are "None", "Sort by averages (ascending)", "Sort by averages (descending)" and "Dendrogram".
sort.columns	Whether to sort columns by their averages or link as a dendrogram. Options are "None", "Sort by averages (ascending)", "Sort by averages (descending)" and "Dendrogram".
colors	A vector of 2 colors representing the maximum and minimum values.
standardization	Whether to standardize the shading of rows or columns. Options are "None", "Standardize rows" and "Standardize columns".
global.font.family	Character; font family for all occurrences of any font attribute for the chart unless specified individually.
global.font.color	Global font color as a named color in character format (e.g. "black") or an rgb value (e.g. #' rgb(0, 0, 0, maxColorValue = 255)).
values.bounds.minimum	Numeric; lower bound of the color range.
values.bounds.maximum	Numeric; upper bound of the color range.
title	Character; chart title.
title.font.family	Character; title font family. Can be "Arial Black", "Arial", "Comic Sans MS", "Courier New", "Georgia", "Impact", "Lucida Console", "Lucida Sans Unicode", "Marlett", "Symbol", "Tahoma", "Times New Roman", "Trebuchet MS", "Verdana", "Webdings"
title.font.color	Title font color as a named color in character format (e.g. "black") or an rgb value (e.g. rgb(0, 0, 0, maxColorValue = 255)).
title.font.size	Integer; Title font size
subtitle	Character
subtitle.font.family	Character; subtitle font family
subtitle.font.color	subtitle font color as a named color in character format (e.g. "black") or an rgb value (e.g. rgb(0, 0, 0, maxColorValue = 255)).
subtitle.font.size	Integer; subtitle font size
footer	Character
footer.font.family	Character; footer font family
footer.font.color	footer font color as a named color in character format (e.g. "black") or an rgb value (e.g. rgb(0, 0, 0, maxColorValue = 255)).
footer.font.size	Integer; footer font size
x.title	Character, x-axis title
x.title.font.family	Character; x-axis title font family
x.title.font.color	x-axis title font color as a named color in character format (e.g. "black") or an rgb value (e.g. rgb(0, 0, 0, maxColorValue = 255)).
x.title.font.size	Integer; x-axis title font size
y.title	Character, y-axis title
y.title.font.family	Character; y-axis title font family
y.title.font.color	y-axis title font color as a named color in character format (e.g. "black") or an rgb value (e.g. rgb(0, 0, 0, max = 255)).
y.title.font.size	Integer; y-axis title font size
x.tick.show	Whether to display the x-axis tick labels
x.tick.font.family	Character; x-axis tick label font family
x.tick.font.color	X-axis tick label font color as a named color in character format (e.g. "black") or an rgb value (e.g. rgb(0, 0, 0, maxColorValue = 255)).
x.tick.font.size	Integer; x-axis tick label font size
y.tick.show	Whether to display the y-axis tick labels
y.tick.font.family	Character; y-axis tick label font family
y.tick.font.color	y-axis tick label font color as a named color in character format (e.g. "black") or an rgb value (e.g. rgb(0, 0, 0, maxColorValue = 255)).
y.tick.font.size	Integer; y-axis tick label font size
legend.show	Whether to display the legend
legend.font.family	Character; legend font family.
legend.font.color	Legend font color as a named color in character format (e.g. "black") or an rgb value (e.g. rgb(0, 0, 0, maxColorValue = 255)).
legend.font.size	Integer; Legend font size.
data.label.show	Whether to display the data values (note that they are always shown as hover text)
data.label.font.size	Integer; Font size for data label.
data.label.font.family	Character; font family for data label.
data.label.format	A string representing a d3 formatting code. See https://github.com/mbostock/d3/wiki/Formatting#numbers
data.label.prefix	Character; prefix for data values.
data.label.suffix	Character; suffix for data values.
hovertext.font.family	Character; font family for hovertext.
hovertext.font.size	Integer; Font size for hovertext (tooltips).
y.hovertext.format	A string representing a d3 formatting code. See https://github.com/mbostock/d3/wiki/Formatting#numbers
y.hovertext.prefix	Character; prefix for hovertext.
y.hovertext.suffix	Character; suffix for hovertext.
left.columns	An optional list of vectors or matrices to be appended to the left of the heatmap.
left.column.headings	An optional comma separated string containing headings for left.columns. If not supplied, colnames of the items in left.columns are used.
right.columns	An optional list of vectors or matrices to be appended to the right of the heatmap.
right.column.headings	An optional comma separated string containing headings for right.columns. If not supplied, colnames of the items in right.columns are used.

Displayr/flipStandardCharts documentation built on Feb. 26, 2024, 12:42 a.m.