HeatMap: Generates a heatmap from a table of data.

In Displayr/flipStandardCharts: Standard R interactive charts

Generates a heatmap from a table of data.

Description

This function wraps the Heatmap function in the rhtmlHeatmap package and performs additional data preparation.

Usage

HeatMap(
  table,
  data.type = "Use an existing table",
  ignore.rows = "NET, Total, SUM",
  ignore.columns = "NET, Total, SUM",
  transpose = FALSE,
  sort.rows = "None",
  sort.columns = "None",
  color = "Blues",
  standardization = "None",
  show.cell.values = "Automatic",
  cell.decimals = 2,
  show.row.labels = "Yes",
  show.column.labels = "Yes",
  show.legend = TRUE,
  chart.title = "",
  x.axis.title = "",
  y.axis.title = "",
  font.family = "sans-serif",
  font.color = "#000000",
  title.font.size = 24,
  xaxis.title.font.size = 14,
  yaxis.title.font.size = 14,
  legend.font.size = 11,
  value.font.size = 11,
  axis.label.font.size = 11,
  left.columns = NULL,
  left.column.headings = "",
  right.columns = NULL,
  right.column.headings = ""
)

Arguments

table	A matrix of data to be displayed.
data.type	Whether table values are numeric or strings. Options are "Use an existing table" or "Type or paste data".
ignore.rows	A string of rows to ignore, delimited by commas.
ignore.columns	A string of rows to ignore, delimited by commas.
transpose	Whether to transpose the table. TRUE or FALSE.
sort.rows	Whether to sort rows by their averages or link as a dendrogram. Options are "None", "Sort by averages (ascending)", "Sort by averages (descending)" and "Dendrogram".
sort.columns	Whether to sort columns by their averages or link as a dendrogram. Options are "None", "Sort by averages (ascending)", "Sort by averages (descending)" and "Dendrogram".
color	Options are "Blues", "Reds", "Greens", "Greys", "Purples", "Oranges", "Heat", "Blues and reds" or "Greys and reds".
standardization	Whether to standardize the shading of rows or columns. Options are "None", "Standardize rows" and "Standardize columns".
show.cell.values	Whether to show values in cells. Options are "Yes", "No" or "Automatic" (<= 20 rows and <= 10 columns).
cell.decimals	The number of decimal points to use for formatting cell values.
show.row.labels	Whether to label the rows. "Yes" or "No".
show.column.labels	Whether to label the columns. "Yes" or "No".
show.legend	Whether to show the legend.
chart.title	Title of the chart.
x.axis.title	Title of the x-axis.
y.axis.title	Title of the y-axis.
font.family	Font family to be used for all titles, axes, labels and values.
font.color	Font color to be used for all titles, axes and labels.
title.font.size	Font size of the title.
xaxis.title.font.size	Font size of the x-axis title.
yaxis.title.font.size	Font size of the y-axis title.
legend.font.size	Font size of the legend.
value.font.size	Font size of the cell values and tooltips.
axis.label.font.size	Font size of the axis labels.
left.columns	An optional list of vectors or matrices to be appended to the left of the heatmap.
left.column.headings	An optional comma separated string containing headings for left.columns. If not supplied, colnames of the items in left.columns are used.
right.columns	An optional list of vectors or matrices to be appended to the right of the heatmap.
right.column.headings	An optional comma separated string containing headings for right.columns. If not supplied, colnames of the items in right.columns are used.

Displayr/flipStandardCharts documentation built on Feb. 26, 2024, 12:42 a.m.