Description Usage Arguments Details References See Also Examples
Returns the branch length distance between two trees.
1 | calcDstBLD(tree_1, tree_2, nrmlsd = FALSE, parallel = FALSE, progress = "none")
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tree_1 |
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tree_2 |
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nrmlsd |
Boolean, should returned value be between 0 and 1? Default, FALSE. |
parallel |
logical, make parallel? |
progress |
name of the progress bar to use, see |
BLD is the Robinson-Foulds distance weighted by branch length. Instead of summing the differences in partitions between the two trees, the metric takes the square root of the squared difference in branch lengths. Parallelizable.
Kuhner, M. K. and Felsenstein, J. (1994) Simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Molecular Biology and Evolution, 11, 459-468.
calcDstTrp
, calcDstRF
https://github.com/DomBennett/treeman/wiki/calc-methods
1 2 3 4 | library(treeman)
tree_1 <- randTree(10)
tree_2 <- randTree(10)
calcDstBLD(tree_1, tree_2)
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