Files in DomBennett/treeman
Phylogenetic Tree Manipulation Class and Methods
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE.txt
NAMESPACE
R/calc-methods.R
R/check_methods.R
R/cnvrt-methods.R
R/gen-methods.R
R/get-nd-methods.R
R/get-nds-methods.R
R/get-spcl-methods.R
R/manip-methods.R
R/ndlst-methods.R
R/ndmtrx-methods.R
R/node-declaration.R
R/read-write-methods.R
R/server-methods.R
R/set-methods.R
R/treeman-declaration.R
R/treemen-declaration.R
R/update-methods.R
R/viz-methods.R
R/zzz.R
README.md
data/birds.rda
data/mammals.rda
data/plants.rda
man/Node-class.Rd
man/TreeMan-class.Rd
man/TreeMan-to-phylo.Rd
man/TreeMen-class.Rd
man/TreeMen-to-multiPhylo.Rd
man/addClade.Rd
man/addNdmtrx.Rd
man/addTip.Rd
man/birds.Rd
man/blncdTree.Rd
man/cTrees.Rd
man/calcDstBLD.Rd
man/calcDstMtrx.Rd
man/calcDstRF.Rd
man/calcDstTrp.Rd
man/calcFrPrp.Rd
man/calcNdBlnc.Rd
man/calcNdsBlnc.Rd
man/calcOvrlp.Rd
man/calcPhyDv.Rd
man/calcPrtFrPrp.Rd
man/checkNdlst.Rd
man/checkTreeMen.Rd
man/fastCheckTreeMan.Rd
man/getAge.Rd
man/getBiprts.Rd
man/getCnnctdNds.Rd
man/getDcsd.Rd
man/getLvng.Rd
man/getNdAge.Rd
man/getNdKids.Rd
man/getNdLng.Rd
man/getNdPD.Rd
man/getNdPrdst.Rd
man/getNdPrids.Rd
man/getNdPtids.Rd
man/getNdSlt.Rd
man/getNdSstr.Rd
man/getNdsAge.Rd
man/getNdsFrmTxnyms.Rd
man/getNdsKids.Rd
man/getNdsLng.Rd
man/getNdsPD.Rd
man/getNdsPrdst.Rd
man/getNdsPrids.Rd
man/getNdsPtids.Rd
man/getNdsSlt.Rd
man/getNdsSstr.Rd
man/getOtgrp.Rd
man/getPath.Rd
man/getPrnt.Rd
man/getSpnAge.Rd
man/getSpnsAge.Rd
man/getSubtree.Rd
man/getUnqNds.Rd
man/isUltrmtrc.Rd
man/list-to-TreeMen.Rd
man/loadTreeMan.Rd
man/mammals.Rd
man/multiPhylo-class.Rd
man/multiPhylo-to-TreeMen.Rd
man/phylo-class.Rd
man/phylo-to-TreeMan.Rd
man/pinTips.Rd
man/plants.Rd
man/pstMnp.Rd
man/randTree.Rd
man/readTree.Rd
man/readTrmn.Rd
man/rmClade.Rd
man/rmNdmtrx.Rd
man/rmNodes.Rd
man/rmOtherSlt.Rd
man/rmTips.Rd
man/saveTreeMan.Rd
man/searchTxnyms.Rd
man/setAge.Rd
man/setNdID.Rd
man/setNdOther.Rd
man/setNdSpn.Rd
man/setNdsID.Rd
man/setNdsOther.Rd
man/setNdsSpn.Rd
man/setPD.Rd
man/setTxnyms.Rd
man/taxaResolve.Rd
man/treeman-package.Rd
man/twoer.Rd
man/ultrTree.Rd
man/unblncdTree.Rd
man/updateSlts.Rd
man/writeTree.Rd
man/writeTrmn.Rd
other/1_pinning.R
other/1_pinning.RData
other/2_simulation.R
other/3_turnover.R
other/3_turnover.Rd
other/4_merge.R
other/README.md
other/apes.png
other/birds.tre
other/birds_old.tre
other/compare.R
other/compare.Rd
other/compare.jpeg
other/demo.R
other/development.R
other/generate_mammals.R
other/generate_tree_data.R
other/mammals.tre
other/merge.png
other/mtt_community_tools.R
other/ndmtrx_speed.R
other/pinning.png
other/plants.tre
other/simulation.png
other/test_reading_newick.R
other/test_rf_dist.R
other/tree-labels.jpg
other/tree_memory.jpg
other/tree_memory_sizes.R
other/turnover.png
other/viz_dev.R
src/get_tools.c
src/packagename_init.c
src/read_tools.c
tests/test-all.R
tests/testthat/test-calc-methods.R
tests/testthat/test-check-methods.R
tests/testthat/test-cnvrt-methods.R
tests/testthat/test-display-methods.R
tests/testthat/test-gen-methods.R
tests/testthat/test-get-nd-methods.R
tests/testthat/test-get-nds-methods.R
tests/testthat/test-get-spcl-methods.R
tests/testthat/test-manip-methods.R
tests/testthat/test-ndlst-methods.R
tests/testthat/test-ndmtrx-methods.R
tests/testthat/test-node.R
tests/testthat/test-rw-methods.R
tests/testthat/test-set-methods.R
tests/testthat/test-treeman.R
tests/testthat/test-treemen.R
tests/testthat/test-update-methods.R
tests/testthat/test_server_methods.R
