other/development.R
In DomBennett/treeman: Phylogenetic Tree Manipulation Class and Methods
# TODO:
# -- rework how upgrading works
# -- reGravitise and reBalance
# -- create node object methods
# -- save and load TreeMen
library(treeman)
txt<-"(Mimus_gilvus:42.797302,((((Coereba_flaveola:8.469427,Tiaris_bicolor:8.469427)Node5:8.287735,Sicalis_flaveola:16.757164)Node4:4.542213,(Setophaga_ruticilla:19.005642,(Zonotrichia_capensis:16.089878,(Quiscalus_major:13.013371,(Icterus_nigrogularis:8.389537,Icterus_icterus:8.389537)Node9:4.623834)Node8:3.076508)Node7:2.915765)Node6:2.293731)Node3:8.74406,Passer_domesticus:30.043432)Node2:12.753868)Node1:73.14138;"
phylo <- ape::read.tree(text=txt)
tree <- as(phylo, 'TreeMan')
summary(tree)
DomBennett/treeman documentation built on Nov. 12, 2020, 1:35 p.m.
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# TODO:
# -- rework how upgrading works
# -- reGravitise and reBalance
# -- create node object methods
# -- save and load TreeMen
library(treeman)
txt<-"(Mimus_gilvus:42.797302,((((Coereba_flaveola:8.469427,Tiaris_bicolor:8.469427)Node5:8.287735,Sicalis_flaveola:16.757164)Node4:4.542213,(Setophaga_ruticilla:19.005642,(Zonotrichia_capensis:16.089878,(Quiscalus_major:13.013371,(Icterus_nigrogularis:8.389537,Icterus_icterus:8.389537)Node9:4.623834)Node8:3.076508)Node7:2.915765)Node6:2.293731)Node3:8.74406,Passer_domesticus:30.043432)Node2:12.753868)Node1:73.14138;"
phylo <- ape::read.tree(text=txt)
tree <- as(phylo, 'TreeMan')
summary(tree)
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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