move_output_to_dbOutput: Move temporary output data to output databases

In DrylandEcology/rSFSW2: Simulation Framework for SOILWAT2

Description

Move temporary output data to output databases

Usage

move_output_to_dbOutput(
  SFSW2_prj_meta,
  t_job_start,
  opt_parallel,
  opt_behave,
  opt_out_run,
  opt_verbosity,
  check_if_Pid_present = FALSE,
  dir_out_temp = NULL
)

Arguments

dir_out_temp

A character string. The path to temporary output files. If NULL, then temporary output files are assumed to be located at SFSW2_prj_meta[["project_paths"]][["dir_out_temp"]]. This cannot be NULL unless all simulation runs have finished (to prevent overwriting of temporary output files of a potential concurrent run). This can however only be checked if opt_behave[["keep_dbWork_updated"]].

Details

Expectations on how the function locates files on disk:

• SFSW2_prj_meta[["project_paths"]][["dir_out"]] is the path to dbWork

• SFSW2_prj_meta[["project_paths"]][["dir_out_temp"]] is the path to concatFile and ‘SQL_tmptxt_failed.txt’

• dir_out_temp is the path to temporary output files

• SFSW2_prj_meta[["fnames_out"]][["dbOutput"]] is the full file name of dbOutput

• SFSW2_prj_meta[["fnames_out"]][["dbOutput_current"]] is the full file name of dbOutput_current

The code executes opt_out option dbOutCurrent_from_dbOut only, once all simulation runs are completed.

DrylandEcology/rSFSW2 documentation built on Aug. 18, 2020, 1:27 p.m.