Main function used to convert the inputed genes from one set of annotations to another.
A character vector of genes
The name of the organism
The annotation type of the inputted genes
The annotation type of the output
A boolean controlling whether to return all annotations
organism must be the proper, scientific name. However, there are three shortcuts hardcoded for
rattus_norvegicus. These would be
rat respectively. If you want to convert annotation for a different organism, please add it first using the
output must match the field names in the SQL table. Valid names are
date. Note that
output can accept multilength character vectors.
full will return all annotations for the queried genes instead of just the specified output.
output <- convert(genes, "human", "symbol", "ensembl")
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