cond_net: Conditional probability network.
In ECGen/coNet: Model and analyze co-occurrence based networks

Description Usage Arguments Value Note Author(s) See Also Examples

View source: R/cond_net.R

Generates a matrix of conditional probabilities for a set of co-occurrences.

1	cond_net(x)

`x`	A matrix of species co-occurrences with species in columns and observations in rows.

Returns a matrix of conditional probabilities for a set of species.

This is primarily a low-level function used by coNet, it may be of interest to more advanced users who would like to directly compute the conditional probabilities from a set of co-occurrences.

Matthew K. Lau

coNet, cond_prob to See Also as help, ~~~

A <- c(1, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1)
B <- c(1, 1, 0, 1, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1)
C <- c(1, 0, 1, 0, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1)
D <- c(0, 1, 1, 1, 1, 1, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0)
M <- data.frame(A, B, C, D)
cond_net(M)