Files in ELELAB/lipidQ
Lipidomics Analysis Tool
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/checkColnames.R
R/compactOutput_pmolCalc.R
R/filterDataSet.R
R/filterReplicates.R
R/makeColnames.R
R/makeDatabase.R
R/makeFinalOutput.R
R/makeIndex_OH_DB_C.R
R/mergeDataSets.R
R/mergeFinalOutputs.R
R/merge_endo_and_ISTD_db.R
R/plotHeatmap.R
R/plotPCA.R
R/plotQC_ISTD.R
R/plotQC_totalLipids.R
R/pmolCalc.R
R/readFile.R
R/rmSpaceInBeginning.R
R/runLipidQ.R
R/sort_is.R
README.md
inst/app/server.R
inst/app/ui.R
inst/extdata/.DS_Store
inst/extdata/LipidQ_DataBase/ISTD_LP_DB_MS1_v1.csv
inst/extdata/LipidQ_DataBase/LP_DB_MS1_v1.csv
inst/extdata/LipidQ_DataBase/userSpecifiedColnames.csv
inst/extdata/LipidQ_DataBase/userSpecifiedColnames_test.csv
inst/extdata/dataList.txt
inst/extdata/dataTables/checks/ISTD_lipid_db.csv
inst/extdata/dataTables/checks/endogene_lipid_db.csv
inst/extdata/dataTables/checks/filteredDataSet.csv
inst/extdata/dataTables/checks/finalOutput_molPct.csv
inst/extdata/dataTables/checks/mergedDataSets.csv
inst/extdata/dataTables/checks/pmolCalculatedDataSet.csv
inst/extdata/finalOutput1.csv
inst/extdata/finalOutput2.csv
inst/extdata/finalOutput_molPct.csv
inst/extdata/mE504_Data/mE504_NEG_High-out.csv
inst/extdata/mE504_Data/mE504_NEG_Low-out.csv
inst/extdata/mE504_Data/mE504_POS_High-out.csv
inst/extdata/mE504_Data/mE504_POS_Low-out.csv
inst/extdata/sampleTypes.csv
lipidQ.Rproj
lipidQ.Rproj.Rcheck/00check.log
man/checkColnames.Rd
man/compactOutput_pmolCalc.Rd
man/filterDataSet.Rd
man/filterReplicates.Rd
man/makeColnames.Rd
man/makeDatabase.Rd
man/makeFinalOutput.Rd
man/makeIndex_OH_DB_C.Rd
man/mergeDataSets.Rd
man/mergeFinalOutputs.Rd
man/merge_endo_and_ISTD_db.Rd
man/plotHeatmap.Rd
man/plotPCA.Rd
man/plotQC_ISTD.Rd
man/plotQC_totalLipids.Rd
man/pmolCalc.Rd
man/readFile.Rd
man/rmSpaceInBeginning.Rd
man/runLipidQ.Rd
man/sort_is.Rd
tests/data/test/filteredDataSet.csv
tests/data/test/finalOutput_molPct.csv
tests/data/test/finalOutput_pmol.csv
tests/data/test/indexDataC.csv
tests/data/test/indexDataDB.csv
tests/data/test/indexDataOH.csv
tests/data/test/mergedDataSets.csv
tests/data/test/mergedDataSets_multiply_2.csv
tests/data/test/pmolCalc.csv
tests/data/test/pmolCalc_LOQ.csv
tests/data/test/sort_is.csv
tests/data/validation/filteredDataSet.csv
tests/data/validation/finalOutput_molPct.csv
tests/data/validation/finalOutput_pmol.csv
tests/data/validation/indexDataC.csv
tests/data/validation/indexDataDB.csv
tests/data/validation/indexDataOH.csv
tests/data/validation/mergedDataSets.csv
tests/data/validation/mergedDataSets_multiply_2.csv
tests/data/validation/pmolCalc.csv
tests/data/validation/pmolCalc_LOQ.csv
tests/data/validation/sort_is.csv
tests/fun_adHocTests.R
tests/run_tests.R
tests/testFiles/functions.R
vignettes/globalOptions.R
vignettes/globalOptions.Rmd
vignettes/globalOptions.html
vignettes/globalOptions.md
vignettes/installLipidQ.R
vignettes/installLipidQ.Rmd
vignettes/installLipidQ.html
vignettes/installLipidQ.md
vignettes/quantificationInputData.R
vignettes/quantificationInputData.Rmd
vignettes/quantificationInputData.html
vignettes/quantificationInputData.md
vignettes/quantificationOutputFiles.R
vignettes/quantificationOutputFiles.Rmd
vignettes/quantificationOutputFiles.html
vignettes/quantificationOutputFiles.md
vignettes/quantificationParameters.R
vignettes/quantificationParameters.Rmd
vignettes/quantificationParameters.html
vignettes/quantificationParameters.md
vignettes/tutorial_globalOptions.R
vignettes/tutorial_globalOptions.Rmd
vignettes/tutorial_globalOptions.html
vignettes/tutorial_globalOptions.md
vignettes/tutorial_merging.R
vignettes/tutorial_merging.Rmd
vignettes/tutorial_merging.html
vignettes/tutorial_merging.md
vignettes/tutorial_quantification.R
vignettes/tutorial_quantification.Rmd
vignettes/tutorial_quantification.html
vignettes/tutorial_quantification.md
vignettes/tutorial_visualization.R
vignettes/tutorial_visualization.Rmd
vignettes/tutorial_visualization.html
vignettes/tutorial_visualization.md
vignettes/visualization.Rmd
