vignettes/quantificationOutputFiles.md

In ELELAB/lipidQ: Lipidomics Analysis Tool

title: "Output files" author: "André Vidas Olsen" date: "2018-04-15" output: html_document vignette: > %\VignetteIndexEntry{Vignette Title} %\VignetteEngine{knitr::rmarkdown} %\VignetteEncoding{UTF-8}

Introduction

This vignettes describes the different output files produced in the quantification of intensity data made by using lipidQ.

mergedDataSet.csv

This file contains all the input data merged together into one file. Only relevant columns are put into this data, while unrelevant columns are discarded.

filteredDataSet.csv

This data contains the merged data after filtering based on requirements from the two databases.

pmolCalculatedDataSet.csv

Contains relevant data with quantification columns.

finalOutput_pmol.csv & finalOutput_molPct.csv

The finalOutput_pmol.csv file, contains the calculated pmol of all the lipids that is detected, whereas finalOutput_molPct.csv file, contains pmol values normalized mol% (total lipid pmol is 100% 100mol%). Every row that only contains 0's in all rows are removed.

indexDataC, indexDataDB, and indexDataOH

The 3 index data output files contains information about the number of Carbons (indexDataC), double bonds (indexDataDB) and hydroxygroups (indexDataOH) within the lipid chains.

ELELAB/lipidQ documentation built on Feb. 24, 2020, 12:54 a.m.