likelihood_single: Calculate likelihood curve of frequency estimates for a...
In EdwardSLee/alphabetr: Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells
Description
Usage
Arguments
Value
Description
Calculate likelihood curve of frequency estimates for a single TCR clone
Usage
1
likelihood_single(est, err, numb_wells, numb_cells, numb_sample)
Arguments
est
Clonal frequency estimate
err
Mean drop error rate
numb_wells
A vector with the number of wells with the distinct
sample sizes
numb_cells
A vector of the distinct sample sizes, i.e. the number of
cells per well
numb_sample
A vector with the number of wells of the sample size of
the same position of numb_cells that contains the alpha and beta
chains the clone
Value
A numeric with the negative log likelihood
EdwardSLee/alphabetr documentation built on May 6, 2019, 3:12 p.m.
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Description Usage Arguments Value
Description
Calculate likelihood curve of frequency estimates for a single TCR clone
Usage
1 | likelihood_single(est, err, numb_wells, numb_cells, numb_sample)
|
Arguments
est |
Clonal frequency estimate |
err |
Mean drop error rate |
numb_wells |
A vector with the number of wells with the distinct sample sizes |
numb_cells |
A vector of the distinct sample sizes, i.e. the number of cells per well |
numb_sample |
A vector with the number of wells of the sample size of
the same position of |
Value
A numeric with the negative log likelihood
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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