itis_reclassify: Reclassify ITIS species based off a list of higher taxonomic...
In EmilyMarkowitz-NOAA/FishEconProdOutput: Price Method Fisheries Economics Total Factor Productivity Outputs
Description
Usage
Arguments
Value
Examples
View source: R/FishEconProdOutput.R
Description
Reclassify ITIS species based off a list of higher taxonomic groupings
Usage
1
itis_reclassify(tsn, categories, uncategorized_name = "Uncategorized")
Arguments
tsn
A vector of Taxonomic Serial Numbers to be evaluated.
categories
A list of the categories and associated TSN values. within a list of a category, a minus (-) in front of a number is short hand to remove organisms within that tsn's taxonomy from being listed in a category. See the example for an instance where that makes sense.
uncategorized_name
A string of what to call the missing value.
Value
df_out, tsn_indata
Examples
1
2
3
4
5
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7
8
9
itis_reclassify(tsn = c(83677, # subphylum Crustacea; shellfish
172746, # Scophthalmus aquosus; finfish
173747, # class Reptilia; uncategorized as part of tetrapoda
98678), # Cancer borealis; shellfish
categories = list('Finfish' = c(914179, # Infraphylum Gnathostomata
-914181), # Tetrapoda; - = do NOT include
"Shellfish" = c(82696, # Phylum Arthropoda
69458)), # Phylum Mollusca
uncategorized_name = "uncategorized")
EmilyMarkowitz-NOAA/FishEconProdOutput documentation built on Aug. 30, 2021, 6:49 p.m.
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Description Usage Arguments Value Examples
View source: R/FishEconProdOutput.R
Description
Reclassify ITIS species based off a list of higher taxonomic groupings
Usage
1 | itis_reclassify(tsn, categories, uncategorized_name = "Uncategorized")
|
Arguments
tsn |
A vector of Taxonomic Serial Numbers to be evaluated. |
categories |
A list of the categories and associated TSN values. within a list of a category, a minus (-) in front of a number is short hand to remove organisms within that tsn's taxonomy from being listed in a category. See the example for an instance where that makes sense. |
uncategorized_name |
A string of what to call the missing value. |
Value
df_out, tsn_indata
Examples
1 2 3 4 5 6 7 8 9 | itis_reclassify(tsn = c(83677, # subphylum Crustacea; shellfish
172746, # Scophthalmus aquosus; finfish
173747, # class Reptilia; uncategorized as part of tetrapoda
98678), # Cancer borealis; shellfish
categories = list('Finfish' = c(914179, # Infraphylum Gnathostomata
-914181), # Tetrapoda; - = do NOT include
"Shellfish" = c(82696, # Phylum Arthropoda
69458)), # Phylum Mollusca
uncategorized_name = "uncategorized")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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