API for EmmaDann/hexamerModel
Tools for modelling random hexamer primer binding
| Global functions | |
|---|---|
| add.id | Man page Source code |
| add.id.2 | Man page Source code |
| adjust.prediction | Source code |
| adjust.prediction.exp | Source code |
| all.hexamers | Man page Source code |
| batch.prob.uniform | Man page Source code |
| build.random.base | Man page Source code |
| build.random.hex | Man page Source code |
| compare.spear.real | Man page Source code |
| compute.keqs | Man page Source code |
| compute.keqs.noeps | Source code |
| compute.primer.usage | Man page Source code |
| computeDistance | Source code |
| corr.real | Man page Source code |
| correlate.pred.exp | Man page Source code |
| coverage.yield.delta | Man page Source code |
| coverage.yield.single | Man page Source code |
| delta.yield.permutation | Man page Source code |
| epsilon.minimize.chisq | Man page Source code |
| find.rev.pairs | Man page Source code |
| get.avg.methylation | Man page Source code |
| get.range.methylation | Man page Source code |
| hexamerMatrix | Man page Source code |
| is.palindrome | Man page Source code |
| join.pt.data | Man page Source code |
| load.expVSpred.coverage | Man page Source code |
| load.kmer.abundance | Man page Source code |
| load.modelled.deltaG | Man page Source code |
| load.pt.data | Man page Source code |
| loadPtMatrix | Man page Source code |
| make.base.res.bw | Man page Source code |
| make.cum.dist | Man page Source code |
| make.hex.usage.df | Source code |
| make.match.df | Man page Source code |
| make.predVSexp.range | Man page Source code |
| make.predVSexp.track | Man page Source code |
| make.random.profile | Man page Source code |
| make_pair_df | Man page Source code |
| make_ppm_of_usage | Man page Source code |
| nice.plotTrack | Man page Source code |
| norm.scale.n.yield | Man page Source code |
| normalize.coverage | Man page Source code |
| plot.batch.accuracy | Man page Source code |
| plot.cov.wAnnotation | Source code |
| plot.expVSpred.coverage.track | Man page Source code |
| plot.prediction | Man page Source code |
| plot.subset | Source code |
| predict.coverage | Man page Source code |
| predict.coverage.noeps | Source code |
| prevalent_nucleotide | Man page Source code |
| primer.prob | Man page Source code |
| random.delta.yield.dist | Man page Source code |
| random.from.even.2 | Man page Source code |
| randomize | Man page Source code |
| rev.comp | Man page Source code |
| simulate.primer.pool | Man page Source code |
| smooth.coverage | Man page Source code |
| split.tracks | Man page Source code |
| subsetByRegion | Man page Source code |
| test.add.id | Man page Source code |
| trim.edges | Source code |
