random.delta.yield.dist: Random yield

In EmmaDann/hexamerModel: Tools for modelling random hexamer primer binding

Description

Computes difference in coverage yield for region of interest between predicted coverage profiles of two different primer batches. To calculate p-value of yield score, it also computes the distribution of difference in yield between randomnly shuffled coverage profiles.

Usage

random.delta.yield.dist(my.track, roi.track, n.iterations = 1000,
  threads = detectCores(), verbose = T)

Arguments

my.track	GRanges object with values for predicted coverage of best batch (best) and random batch (even) (SCALED so no cov < 0)
roi.track	GRanges object of regions of interest
n.iterations	number of iterations
threads	number of threads to use
verbose	logical indicating wheather to print progress

Value

list of delta yield and vector of delta yield for random permutations

EmmaDann/hexamerModel documentation built on May 5, 2019, 4:48 p.m.